Factsheet for GSMUA_Achr4P04900_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P05030_001	Banana	cytosol	78.6	79.2
Os08t0481200-01	Rice	cytosol	61.93	50.93
TraesCS7D01G289800.1	Wheat	cytosol	62.12	50.93
HORVU7Hr1G061800.2	Barley	cytosol	61.93	50.78
TraesCS7A01G293900.1	Wheat	cytosol	61.93	50.78
TraesCS7B01G186600.1	Wheat	cytosol	61.36	50.31
TraesCS7D01G536300.1	Wheat	cytosol	61.36	50.23
TraesCS7A01G549700.1	Wheat	cytosol	61.17	50.0
HORVU7Hr1G121810.1	Barley	cytosol	60.61	49.92
EES15482	Sorghum	cytosol	60.61	49.77
Zm00001d014845_P001	Maize	cytosol	60.42	49.77
KXG20946	Sorghum	cytosol	60.42	49.61
Zm00001d031263_P001	Maize	cytosol	60.23	49.3
KRH40395	Soybean	cytosol	59.09	49.13
VIT_03s0038g03660.t01	Wine grape	cytosol	59.28	48.83
KRH00831	Soybean	cytosol	57.95	48.19
TraesCS7B01G473200.1	Wheat	cytosol	61.36	48.07
Solyc04g082440.2.1	Tomato	cytosol	57.77	47.0
PGSC0003DMT400025648	Potato	cytosol	57.58	46.84
VIT_18s0001g14180.t01	Wine grape	cytosol	58.52	45.18
CDY68037	Canola	cytosol	55.68	44.89
CDX95193	Canola	cytosol	55.49	44.73
Bra027977.1-P	Field mustard	cytosol	55.11	44.63
AT5G42340.1	Thale cress	cytosol	55.68	44.55
PGSC0003DMT400075612	Potato	cytosol	53.41	43.72
KRH33490	Soybean	cytosol	42.05	42.29
Solyc12g094610.1.1	Tomato	cytosol	42.61	41.9
Os06t0726900-00	Rice	cytosol	25.19	35.0
GSMUA_Achr5P28670_001	Banana	cytosol	37.31	34.56
GSMUA_Achr10P...	Banana	cytosol	37.69	31.79
GSMUA_Achr5P07140_001	Banana	cytosol	37.5	31.53
GSMUA_Achr3P00280_001	Banana	cytosol	35.8	31.34
GSMUA_Achr1P24290_001	Banana	cytosol	34.47	29.79
GSMUA_Achr6P34170_001	Banana	cytosol	36.93	29.37
GSMUA_Achr9P15600_001	Banana	cytosol	32.95	25.74
GSMUA_Achr8P25140_001	Banana	plastid	20.45	25.71
GSMUA_Achr6P06560_001	Banana	cytosol	17.8	25.2
GSMUA_Achr9P12570_001	Banana	cytosol	13.83	24.33
GSMUA_Achr4P01530_001	Banana	plasma membrane	28.03	24.22
GSMUA_Achr10P...	Banana	cytosol	16.86	23.8
GSMUA_Achr9P01670_001	Banana	cytosol	20.83	23.61
GSMUA_Achr10P...	Banana	cytosol	38.45	23.5
GSMUA_Achr9P28820_001	Banana	mitochondrion	26.14	23.04
GSMUA_Achr10P...	Banana	mitochondrion	19.7	23.01
GSMUA_Achr6P36530_001	Banana	cytosol	27.46	21.97
GSMUA_Achr7P09440_001	Banana	mitochondrion	26.52	21.94
GSMUA_Achr7P22130_001	Banana	cytosol	25.57	21.33
GSMUA_Achr2P15530_001	Banana	mitochondrion	26.52	21.21
GSMUA_Achr4P03430_001	Banana	cytosol	10.23	20.07
GSMUA_Achr6P07710_001	Banana	cytosol	13.45	19.89
GSMUA_Achr5P21360_001	Banana	cytosol	28.41	19.76
GSMUA_Achr4P14130_001	Banana	cytosol	12.69	19.31
GSMUA_Achr4P00200_001	Banana	plastid	25.38	19.03
GSMUA_Achr3P18890_001	Banana	cytosol	12.88	18.94
GSMUA_Achr10P...	Banana	cytosol	13.07	18.55
GSMUA_Achr9P14560_001	Banana	cytosol	19.7	17.78
GSMUA_Achr4P10960_001	Banana	endoplasmic reticulum	13.07	17.0
GSMUA_Achr4P06990_001	Banana	plastid	12.88	16.87
GSMUA_Achr7P26200_001	Banana	extracellular, golgi	12.69	16.18
GSMUA_Achr3P06160_001	Banana	plastid	17.23	16.05
GSMUA_Achr4P11070_001	Banana	cytosol	12.5	15.64
GSMUA_Achr3P29830_001	Banana	cytosol	12.31	15.62
GSMUA_Achr1P22790_001	Banana	mitochondrion	12.88	15.01
GSMUA_Achr5P16030_001	Banana	cytosol	12.69	14.23

Protein Annotations

Gene3D:1.25.10.10	Gene3D:3.30.40.10	MapMan:35.1	InterPro:ARM-like	InterPro:ARM-type_fold	ncoils:Coil
GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0006464	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	EnsemblPlantsGene:GSMUA_Achr4G04900_001
EnsemblPlants:GSMUA_Achr4P04900_001	EnsemblPlants:GSMUA_Achr4T04900_001	InterPro:IPR003613	InterPro:IPR011989	InterPro:IPR013083	UniProt:M0SL57
PFAM:PF04564	PFscan:PS51698	PANTHER:PTHR23315	PANTHER:PTHR23315:SF49	SMART:SM00504	SUPFAM:SSF48371
SUPFAM:SSF57850	UniParc:UPI0002966B51	InterPro:Ubox_domain	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:

Description

Putative U-box domain-containing protein 15 [Source:GMGC_GENE;Acc:GSMUA_Achr4G04900_001]

Coordinates

chr4:+:3844084..3846449

Molecular Weight (calculated)

59156.6 Da

IEP (calculated)

5.719

GRAVY (calculated)

-0.337

Length

528 amino acids

Sequence
(BLAST)

001: MGDVEEEKNP AVAADGGREK EREAAAVAVA GEREHDVDDL IRELKVIIDS VAAFGDYRRT QRKESFNLVR RMKLVTPLLE EIQELEVAEA LEGEAVMGRF
101: HMVYEKLNHA LDGMPYEEIG VSDEVKEQVE LMSVQLRRAK RRTDTQDMEL AMDLMVVISK RDDRNADGAI IERLAKNLEL QTLPDLRAET MAIKKLIKER
201: CGQNGESTQQ IIDLLNKFKQ TAGIEDTNGL SDVTLPKYLE KCPSLMIPND FLCPISLEIM MDPVIVASGQ TYERRSIQMW LEAGHRTCPK TRQTLAHLSL
301: APNYALRNLI LQWCERNKVE LLKREPEQDP DHSERKEEIP SLVGDLSSIH LDAQRRAVKK LRMLSKENPD NRVAIAKHGG IPALENSAAA LFSLSMLDEN
401: KVTIGTRAIE AGVVAPLRQV LDDKNLGMVD EALSIFLLLA SHPDGRAAIG QLPFIEALVR LIKDGTPKNR ECALSVLLEL GSHGSSFLLA ALQFGVYDHV
501: REVEKSGTNR GQRKAKSLLQ LMRKCEHV

Best Arabidopsis Sequence Match ( AT5G42340.1 )
(BLAST)

001: MVDVMDTDEE ATGDAENRDE EVTAEEPIHD EVVDAVEIHE EEVKEDDDDC EGLVSDIVSI VEFLDQINGY RRTQQKECFN LVRRLKILIP FLDEIRGFES
101: PSCKHFLNRL RKVFLAAKKL LETCSNGSKI YMALDGETMM TRFHSIYEKL NRVLVKAPFD ELMISGDAKD EIDSLCKQLK KAKRRTDTQD IELAVDMMVV
201: FSKTDPRNAD SAIIERLAKK LELQTIDDLK TETIAIQSLI QDKGGLNIET KQHIIELLNK FKKLQGLEAT DILYQPVINK AITKSTSLIL PHEFLCPITL
301: EIMLDPVIIA TGQTYEKESI QKWFDAGHKT CPKTRQELDH LSLAPNFALK NLIMQWCEKN NFKIPEKEVS PDSQNEQKDE VSLLVEALSS SQLEEQRRSV
401: KQMRLLAREN PENRVLIANA GAIPLLVQLL SYPDSGIQEN AVTTLLNLSI DEVNKKLISN EGAIPNIIEI LENGNREARE NSAAALFSLS MLDENKVTIG
501: LSNGIPPLVD LLQHGTLRGK KDALTALFNL SLNSANKGRA IDAGIVQPLL NLLKDKNLGM IDEALSILLL LASHPEGRQA IGQLSFIETL VEFIRQGTPK
601: NKECATSVLL ELGSNNSSFI LAALQFGVYE YLVEITTSGT NRAQRKANAL IQLISKSEQI

Arabidopsis Description

PUB15U-box domain-containing protein 15 [Source:UniProtKB/Swiss-Prot;Acc:Q681N2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.