Factsheet for GSMUA_Achr6P34170_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1
endoplasmic reticulum 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, endoplasmic reticulum, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	endoplasmic reticulum
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr10P...	Banana	cytosol	60.09	63.74
Zm00001d030732_P001	Maize	cytosol	59.94	59.85
Os12t0570000-01	Rice	cytosol	46.39	59.57
Zm00001d041548_P002	Maize	cytosol	60.09	59.38
OQU79384	Sorghum	cytosol	59.49	59.31
GSMUA_Achr5P07140_001	Banana	cytosol	55.12	58.28
GSMUA_Achr5P28670_001	Banana	cytosol	50.0	58.25
VIT_06s0004g04530.t01	Wine grape	cytosol	58.28	56.74
TraesCS5B01G087500.1	Wheat	cytosol	58.28	56.74
HORVU5Hr1G021270.1	Barley	cytosol	58.28	56.74
TraesCS5A01G078400.1	Wheat	cytosol	58.28	56.58
TraesCS5D01G093700.1	Wheat	cytosol	58.13	56.43
HORVU5Hr1G021280.1	Barley	cytosol	58.28	56.25
KRH29807	Soybean	cytosol	55.57	55.82
KRH24807	Soybean	cytosol	55.12	55.29
Solyc11g066040.1.1	Tomato	cytosol	54.82	54.9
PGSC0003DMT400001049	Potato	cytosol	54.52	54.52
PGSC0003DMT400078166	Potato	cytosol	53.92	54.16
Solyc06g076040.2.1	Tomato	cytosol	53.46	53.71
AT3G46510.1	Thale cress	cytosol	51.2	51.52
Bra018212.1-P	Field mustard	cytosol	50.45	51.46
CDX86080	Canola	cytosol	50.75	51.37
Bra033820.1-P	Field mustard	cytosol	50.6	51.06
CDX68379	Canola	cytosol	50.6	51.06
CDX99112	Canola	cytosol	50.15	50.84
AT2G28830.1	Thale cress	endoplasmic reticulum	44.28	50.52
CDX68380	Canola	cytosol	40.21	50.19
GSMUA_Achr3P00280_001	Banana	cytosol	44.73	49.25
CDY31736	Canola	cytosol	47.44	49.07
CDX77213	Canola	cytosol	47.44	48.99
Bra035665.1-P	Field mustard	cytosol	47.74	48.62
GSMUA_Achr1P24290_001	Banana	cytosol	44.28	48.12
GSMUA_Achr10P...	Banana	cytosol	60.54	46.53
KRG99865	Soybean	cytosol	37.8	40.68
GSMUA_Achr4P05030_001	Banana	cytosol	30.57	38.74
GSMUA_Achr4P04900_001	Banana	cytosol	29.37	36.93
GSMUA_Achr9P12570_001	Banana	cytosol	16.27	36.0
GSMUA_Achr6P06560_001	Banana	cytosol	19.88	35.39
GSMUA_Achr8P25140_001	Banana	plastid	21.69	34.29
GSMUA_Achr9P15600_001	Banana	cytosol	34.34	33.73
GSMUA_Achr9P01670_001	Banana	cytosol	22.89	32.62
GSMUA_Achr10P...	Banana	cytosol	18.07	32.09
GSMUA_Achr4P01530_001	Banana	plasma membrane	28.92	31.42
GSMUA_Achr4P03430_001	Banana	cytosol	12.65	31.23
GSMUA_Achr2P15530_001	Banana	mitochondrion	30.57	30.76
GSMUA_Achr6P36530_001	Banana	cytosol	29.82	30.0
GSMUA_Achr10P...	Banana	mitochondrion	19.28	28.32
GSMUA_Achr9P28820_001	Banana	mitochondrion	25.15	27.88
GSMUA_Achr7P22130_001	Banana	cytosol	26.36	27.65
GSMUA_Achr7P09440_001	Banana	mitochondrion	26.05	27.12
GSMUA_Achr5P21360_001	Banana	cytosol	29.97	26.22
GSMUA_Achr6P07710_001	Banana	cytosol	13.86	25.77
GSMUA_Achr4P00200_001	Banana	plastid	27.26	25.71
GSMUA_Achr4P14130_001	Banana	cytosol	13.1	25.07
GSMUA_Achr3P18890_001	Banana	cytosol	13.55	25.07
GSMUA_Achr10P...	Banana	cytosol	14.01	25.0
GSMUA_Achr4P10960_001	Banana	endoplasmic reticulum	15.06	24.63
GSMUA_Achr4P06990_001	Banana	plastid	14.31	23.57
GSMUA_Achr3P29830_001	Banana	cytosol	14.61	23.32
GSMUA_Achr4P11070_001	Banana	cytosol	14.16	22.27
GSMUA_Achr7P26200_001	Banana	extracellular, golgi	13.86	22.22
GSMUA_Achr9P14560_001	Banana	cytosol	18.98	21.54
GSMUA_Achr3P06160_001	Banana	plastid	18.22	21.34
GSMUA_Achr1P22790_001	Banana	mitochondrion	14.01	20.53
GSMUA_Achr5P16030_001	Banana	cytosol	14.16	19.96

Protein Annotations

Gene3D:1.25.10.10	MapMan:19.2.2.1.5.2.1	Gene3D:3.30.40.10	InterPro:ARM-like	InterPro:ARM-type_fold	InterPro:Armadillo
ncoils:Coil	GO:GO:0000003	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737
GO:GO:0005829	GO:GO:0006464	GO:GO:0006950	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152
GO:GO:0008219	GO:GO:0009628	GO:GO:0009791	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740
GO:GO:0019538	GO:GO:0031348	GO:GO:0043069	GO:GO:0048586	EnsemblPlantsGene:GSMUA_Achr6G34170_001	EnsemblPlants:GSMUA_Achr6P34170_001
EnsemblPlants:GSMUA_Achr6T34170_001	InterPro:IPR000225	InterPro:IPR003613	InterPro:IPR011989	InterPro:IPR013083	UniProt:M0TCL0
PFAM:PF00514	PFAM:PF04564	PFscan:PS50176	PFscan:PS51698	PANTHER:PTHR23315	PANTHER:PTHR23315:SF235
SMART:SM00185	SMART:SM00504	SUPFAM:SSF48371	SUPFAM:SSF57850	UniParc:UPI0002956C9C	InterPro:Ubox_domain
InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:	:

Description

E3 ubiquitin-protein ligase SPL11 [Source:GMGC_GENE;Acc:GSMUA_Achr6G34170_001]

Coordinates

chr6:+:32951782..32956280

Molecular Weight (calculated)

72359.0 Da

IEP (calculated)

4.765

GRAVY (calculated)

-0.150

Length

664 amino acids

Sequence
(BLAST)

001: MEEKENGSMV GGEAVVRRLA EAVEEIAVIS EYRNAYRKPL CSLARRIRLL APMFDELGDG RDPITEPVAR TLAPLDDAFA AAKDLLRLGS EGSKIFLVLE
101: REKMIKRFHD VISQIDQALD GISFDKLEIS EEVREQIELV HAQFKRAKER DDMPDAELYS NLLSLYNKSN DAILDPYTLE RLAEQLQLVT ICDLTQESLA
201: LHEMVFASGG DPGENIEKMS MLLKKIKDFV QTQNPEMGTR SDSKPFLLDG KPKVPIVPDD FRCPISLELM KDPVIVATGQ TYERTCIEKW LASGHDTCPK
301: TQQRLSNASL TPNYVLRSLI EQWCEANGMD PPKCPSRSTN PSSACSSREL ANIDALLCKL SSPNLDDQLA AAGELRLLAK RNVDNRICIA KAGAIPLLIN
401: LLSSKNLCTQ EHAVTALLNL SIHDDNKAII ISSGAIPGIV HVLRDGSMEA RENAAATLFS LSVVDEYKGK AVRAGVVPLV MGLLTEPAES MLDESMAILA
501: LLSSHPEGKS AIAAAQAVPL LAEMTANGSP RNRENAAATL LNLSDGEQQL GTMAAAQECG IMGPLQELAI SGTERGKRKA VQLLERMNGF LVQQHEAYAQ
601: AEASTQTQGH IHAQSEPRMN VASADSQDIS LADTGNEVVS YINLHASASW NLIPCGVMAV IELM

Best Arabidopsis Sequence Match ( AT3G46510.1 )
(BLAST)

001: MEEEKASAAQ SLIDVVNEIA AISDYRITVK KLCYNLARRL KLLVPMFEEI RESNEPISED TLKTLMNLKE AMCSAKDYLK FCSQGSKIYL VMEREQVTSK
101: LMEVSVKLEQ SLSQIPYEEL DISDEVREQV ELVLSQFRRA KGRVDVSDDE LYEDLQSLCN KSSDVDAYQP VLERVAKKLH LMEIPDLAQE SVALHEMVAS
201: SGGDVGENIE EMAMVLKMIK DFVQTEDDNG EEQKVGVNSR SNGQTSTAAS QKIPVIPDDF RCPISLEMMR DPVIVSSGQT YERTCIEKWI EGGHSTCPKT
301: QQALTSTTLT PNYVLRSLIA QWCEANDIEP PKPPSSLRPR KVSSFSSPAE ANKIEDLMWR LAYGNPEDQR SAAGEIRLLA KRNADNRVAI AEAGAIPLLV
401: GLLSTPDSRI QEHSVTALLN LSICENNKGA IVSAGAIPGI VQVLKKGSME ARENAAATLF SLSVIDENKV TIGALGAIPP LVVLLNEGTQ RGKKDAATAL
501: FNLCIYQGNK GKAIRAGVIP TLTRLLTEPG SGMVDEALAI LAILSSHPEG KAIIGSSDAV PSLVEFIRTG SPRNRENAAA VLVHLCSGDP QHLVEAQKLG
601: LMGPLIDLAG NGTDRGKRKA AQLLERISRL AEQQKETAVS QPEEEAEPTH PESTTEAADT

Arabidopsis Description

PUB13U-box domain-containing protein 13 [Source:UniProtKB/Swiss-Prot;Acc:Q9SNC6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.