Factsheet for TraesCS5A01G078400.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plasma membrane
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G093700.1	Wheat	cytosol	97.81	97.81
HORVU5Hr1G021270.1	Barley	cytosol	97.51	97.8
TraesCS5B01G087500.1	Wheat	cytosol	97.37	97.65
HORVU5Hr1G021280.1	Barley	cytosol	97.51	96.95
Os12t0570000-01	Rice	cytosol	66.23	87.62
Zm00001d030732_P001	Maize	cytosol	78.8	81.05
OQU79384	Sorghum	cytosol	77.78	79.88
Zm00001d041548_P002	Maize	cytosol	77.78	79.17
KRH29807	Soybean	cytosol	58.19	60.21
KRH24807	Soybean	cytosol	58.19	60.12
AT2G28830.1	Thale cress	endoplasmic reticulum	50.58	59.45
VIT_06s0004g04530.t01	Wine grape	cytosol	58.48	58.65
GSMUA_Achr6P34170_001	Banana	cytosol	56.58	58.28
Solyc11g066040.1.1	Tomato	cytosol	55.56	57.32
PGSC0003DMT400001049	Potato	cytosol	55.41	57.08
PGSC0003DMT400078166	Potato	cytosol	54.53	56.43
Solyc06g076040.2.1	Tomato	cytosol	54.53	56.43
TraesCS7A01G001900.1	Wheat	cytosol	43.13	55.66
AT3G46510.1	Thale cress	cytosol	53.51	55.45
CDX77213	Canola	cytosol	52.05	55.37
CDY31736	Canola	cytosol	51.9	55.3
Bra035665.1-P	Field mustard	cytosol	52.63	55.21
TraesCS4A01G097700.1	Wheat	cytosol	57.31	54.83
Bra033820.1-P	Field mustard	cytosol	52.49	54.56
CDX68379	Canola	cytosol	52.34	54.41
Bra018212.1-P	Field mustard	cytosol	51.75	54.38
CDX68380	Canola	cytosol	42.11	54.14
CDX86080	Canola	cytosol	51.75	53.96
CDX99112	Canola	cytosol	51.32	53.59
TraesCS4A01G498700.1	Wheat	plastid	46.2	49.92
KRG99865	Soybean	cytosol	42.4	47.0
TraesCS6A01G293600.1	Wheat	cytosol	38.3	40.87
TraesCS7A01G293900.1	Wheat	cytosol	36.7	38.98
TraesCS7A01G549700.1	Wheat	cytosol	35.23	37.31
TraesCS2A01G276400.1	Wheat	nucleus	21.64	32.17
TraesCS2A01G193000.1	Wheat	cytosol	16.96	32.13
TraesCS3A01G390200.1	Wheat	cytosol	19.3	30.07
TraesCS1A01G300000.1	Wheat	cytosol	27.49	28.14
TraesCS2A01G190800.1	Wheat	cytosol	17.69	27.75
TraesCS3A01G345800.1	Wheat	plastid	27.34	27.38
TraesCS6A01G190700.1	Wheat	plastid	28.8	27.17
TraesCS2A01G475600.1	Wheat	cytosol, plasma membrane	26.61	26.34
TraesCS3A01G521300.1	Wheat	cytosol	30.56	25.15
TraesCS3A01G410100.1	Wheat	cytosol	19.01	24.57
TraesCS5A01G198800.1	Wheat	cytosol, plasma membrane	23.68	23.11
TraesCS3A01G410000.1	Wheat	cytosol	20.47	22.08

Protein Annotations

Gene3D:1.25.10.10	MapMan:19.2.2.1.5.2.1	Gene3D:3.30.40.10	InterPro:ARM-like	InterPro:ARM-type_fold	InterPro:Armadillo
ncoils:Coil	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0005515
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740
GO:GO:0019538	InterPro:IPR000225	InterPro:IPR003613	InterPro:IPR011989	InterPro:IPR013083	PFAM:PF00514
PFAM:PF04564	PFscan:PS50176	PFscan:PS51698	PANTHER:PTHR23315	PANTHER:PTHR23315:SF235	SMART:SM00185
SMART:SM00504	SUPFAM:SSF48371	SUPFAM:SSF57850	EnsemblPlantsGene:TraesCS5A01G078400	EnsemblPlants:TraesCS5A01G078400.1	InterPro:Ubox_domain
InterPro:Znf_RING/FYVE/PHD	TIGR:cd16664	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr5A:-:96425614..96429912

Molecular Weight (calculated)

74822.8 Da

IEP (calculated)

5.166

GRAVY (calculated)

-0.262

Length

684 amino acids

Sequence
(BLAST)

001: MAGDQEEAER ESPAPAPAAE RVAAAVETVA APGEFRNAYR RQLLALSRRI RLLGPFAEEL RERRRPAGEE EERALATLAD ALEKAVELLK LGREGSRISL
101: VFDRDRVMNI FQEVVAQLEQ ALHDFPYNEL DISDEVKEQV ELVHAQLKRA KERVDMPDDE FYNDLLSLYN KTYDPSAELA ILERLSEKLH LMTITDLTQE
201: SLALHEMVAS GGGQDPGEHI EKLSMLLKKI KDFVQTNNPE MGPPMASKIM DTSGDQKSVI VPDEFRCPIS LELMKDPVIV ATGQTYERSC IEKWLASGHH
301: TCPTTQQRMA NTTLTPNYVL RSLISQWCET NGIEAPKRSS QPNKPMPTCS SSERANIDAL LSKLCSPDPE EQRSAAAELR LLAKRNAHNR LCIAEAGAIP
401: LLLSLLSSSD LRTQEHAVTA LLNLSIHEDN KASIMSSGAV PSVVHVLKNG SMEARENAAA TLFSLSVVDE YKVTIGGTGA IPALVVLLSE GSQRGKKDAA
501: AALFNLCIYQ GNKGRAIRAG LVPLIMGLVT NPTGALMDEA MAILSILSSH QEGKAAIGAA EPVPALVELL GSGSPRNREN AAAVMLHLCS GEQQLVHLAR
601: AHECGIMVPL RELALNGTER GKRKAVQLLE RMSRFMVQQQ EEQESHSRLQ AAAAQVLPQA PEQVQESEIP DQLESPASQY PTLL

Best Arabidopsis Sequence Match ( AT3G46510.1 )
(BLAST)

001: MEEEKASAAQ SLIDVVNEIA AISDYRITVK KLCYNLARRL KLLVPMFEEI RESNEPISED TLKTLMNLKE AMCSAKDYLK FCSQGSKIYL VMEREQVTSK
101: LMEVSVKLEQ SLSQIPYEEL DISDEVREQV ELVLSQFRRA KGRVDVSDDE LYEDLQSLCN KSSDVDAYQP VLERVAKKLH LMEIPDLAQE SVALHEMVAS
201: SGGDVGENIE EMAMVLKMIK DFVQTEDDNG EEQKVGVNSR SNGQTSTAAS QKIPVIPDDF RCPISLEMMR DPVIVSSGQT YERTCIEKWI EGGHSTCPKT
301: QQALTSTTLT PNYVLRSLIA QWCEANDIEP PKPPSSLRPR KVSSFSSPAE ANKIEDLMWR LAYGNPEDQR SAAGEIRLLA KRNADNRVAI AEAGAIPLLV
401: GLLSTPDSRI QEHSVTALLN LSICENNKGA IVSAGAIPGI VQVLKKGSME ARENAAATLF SLSVIDENKV TIGALGAIPP LVVLLNEGTQ RGKKDAATAL
501: FNLCIYQGNK GKAIRAGVIP TLTRLLTEPG SGMVDEALAI LAILSSHPEG KAIIGSSDAV PSLVEFIRTG SPRNRENAAA VLVHLCSGDP QHLVEAQKLG
601: LMGPLIDLAG NGTDRGKRKA AQLLERISRL AEQQKETAVS QPEEEAEPTH PESTTEAADT

Arabidopsis Description

PUB13U-box domain-containing protein 13 [Source:UniProtKB/Swiss-Prot;Acc:Q9SNC6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.