Factsheet for HORVU5Hr1G021270.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plasma membrane
MultiLoc:	cytosol
WoLF PSORT:	plasma membrane
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU5Hr1G021280.1	Barley	cytosol	100.0	99.13
TraesCS5A01G078400.1	Wheat	cytosol	97.8	97.51
TraesCS5B01G087500.1	Wheat	cytosol	97.07	97.07
TraesCS5D01G093700.1	Wheat	cytosol	97.07	96.78
Os12t0570000-01	Rice	cytosol	66.57	87.81
Zm00001d030732_P001	Maize	cytosol	79.33	81.35
OQU79384	Sorghum	cytosol	78.15	80.03
Zm00001d041548_P002	Maize	cytosol	78.45	79.61
KRH29807	Soybean	cytosol	58.65	60.51
KRH24807	Soybean	cytosol	58.65	60.42
AT2G28830.1	Thale cress	endoplasmic reticulum	50.73	59.45
VIT_06s0004g04530.t01	Wine grape	cytosol	58.5	58.5
GSMUA_Achr6P34170_001	Banana	cytosol	56.74	58.28
Solyc11g066040.1.1	Tomato	cytosol	55.57	57.16
PGSC0003DMT400001049	Potato	cytosol	55.43	56.93
PGSC0003DMT400078166	Potato	cytosol	54.69	56.43
Solyc06g076040.2.1	Tomato	cytosol	54.69	56.43
AT3G46510.1	Thale cress	cytosol	53.81	55.61
CDX77213	Canola	cytosol	52.05	55.21
CDY31736	Canola	cytosol	51.91	55.14
Bra035665.1-P	Field mustard	cytosol	52.64	55.06
Bra033820.1-P	Field mustard	cytosol	52.79	54.71
HORVU7Hr1G000780.1	Barley	cytosol	47.21	54.58
CDX68379	Canola	cytosol	52.64	54.56
CDX68380	Canola	cytosol	42.38	54.32
Bra018212.1-P	Field mustard	cytosol	51.76	54.22
CDX86080	Canola	cytosol	51.76	53.81
CDX99112	Canola	cytosol	51.32	53.44
HORVU4Hr1G059610.2	Barley	cytosol	57.18	50.52
KRG99865	Soybean	cytosol	42.23	46.68
HORVU7Hr1G061800.2	Barley	cytosol	36.22	38.35
HORVU7Hr1G121810.1	Barley	cytosol	35.34	37.6
HORVU7Hr1G038870.1	Barley	plastid	14.81	35.19
HORVU6Hr1G073280.1	Barley	cytosol	38.12	32.38
HORVU2Hr1G067610.6	Barley	cytosol	21.41	30.8
HORVU3Hr1G081380.1	Barley	cytosol	19.06	29.41
HORVU2Hr1G036080.15	Barley	plastid	18.77	27.95
HORVU1Hr1G069990.1	Barley	plastid	27.57	27.57
HORVU3Hr1G081300.1	Barley	plastid	27.13	26.89
HORVU3Hr1G113910.3	Barley	cytosol	30.65	24.94
HORVU6Hr1G041430.8	Barley	mitochondrion	29.33	24.27
HORVU5Hr1G059280.1	Barley	cytosol, plasma membrane	23.75	23.11

Protein Annotations

Gene3D:1.25.10.10	MapMan:19.2.2.1.5.2.1	Gene3D:3.30.40.10	EMBL:AK354429	InterPro:ARM-like	InterPro:ARM-type_fold
InterPro:Armadillo	ncoils:Coil	UniProt:F2CS27	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842
GO:GO:0005488	GO:GO:0005515	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	EnsemblPlantsGene:HORVU5Hr1G021270	EnsemblPlants:HORVU5Hr1G021270.1	InterPro:IPR000225
InterPro:IPR003613	InterPro:IPR011989	InterPro:IPR013083	PFAM:PF00514	PFAM:PF04564	PFscan:PS50176
PFscan:PS51698	PANTHER:PTHR23315	PANTHER:PTHR23315:SF235	SMART:SM00185	SMART:SM00504	SUPFAM:SSF48371
SUPFAM:SSF57850	UniParc:UPI0002004575	InterPro:Ubox_domain	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:

Description

RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:F2CS27]

Coordinates

chrchr5H:-:102370756..102375687

Molecular Weight (calculated)

74513.3 Da

IEP (calculated)

5.299

GRAVY (calculated)

-0.264

Length

682 amino acids

Sequence
(BLAST)

001: MAGDQEEAER ESPAPAAERV AAAVEAVAAP GEFRNAYRRQ LLALSRRIRL LGPFAEELRE RRRPAGEEEE RALATLADAL EKALELLKLG REGSRISLVF
101: DRDRVMNKFQ EVVAQLEQAL HDFPYNELDI SDEVREQVEL VHAQLKRAKE RVDVPDDEFY NDLLSLYNKT YDPSAELAIL KSLSEKLHLM TITDLTQESL
201: ALHEMVASGG GQDPGEHIEK LSMLLKKIKD FVQTNNPEMG PPMASKIMDT SGDQKSVIVP DEFRCPISLE LMKDPVIVAT GQTYERPCIE KWLASGHHTC
301: PSTQQRMSNT TLTPNYVLRS LISQWCETNG IEAPKRSSQP NKPVPACSSS ERANIDALLS KLCSPDPEEQ RSAAAELRLL AKRNAHNRLC IAEAGAIPLL
401: LSLLSSSDLR TQEHAVTALL NLSIHEDNKA SIMSSGAVPS VVHVLKNGSM EARENAAATL FSLSVVDEYK VTIGGTGAIP ALVVLLSEGS QRGKKDAAAA
501: LFNLCIYQGN KGRAIRAGLV PLIMGLVTNP TGALMDEAMA ILSILSSHQE GKAAIGAAEP VPALVELLGS GSPRNRENAA AVMLHLCSGE QQLVHLARAH
601: ECGIMVPLRE LALNGTERGK RKAVQLLERM SRFVVQQQEE QESHSRLQAA TAQVLPQAPE QVQESEIPDQ LDSPASQYPT LL

Best Arabidopsis Sequence Match ( AT3G46510.1 )
(BLAST)

001: MEEEKASAAQ SLIDVVNEIA AISDYRITVK KLCYNLARRL KLLVPMFEEI RESNEPISED TLKTLMNLKE AMCSAKDYLK FCSQGSKIYL VMEREQVTSK
101: LMEVSVKLEQ SLSQIPYEEL DISDEVREQV ELVLSQFRRA KGRVDVSDDE LYEDLQSLCN KSSDVDAYQP VLERVAKKLH LMEIPDLAQE SVALHEMVAS
201: SGGDVGENIE EMAMVLKMIK DFVQTEDDNG EEQKVGVNSR SNGQTSTAAS QKIPVIPDDF RCPISLEMMR DPVIVSSGQT YERTCIEKWI EGGHSTCPKT
301: QQALTSTTLT PNYVLRSLIA QWCEANDIEP PKPPSSLRPR KVSSFSSPAE ANKIEDLMWR LAYGNPEDQR SAAGEIRLLA KRNADNRVAI AEAGAIPLLV
401: GLLSTPDSRI QEHSVTALLN LSICENNKGA IVSAGAIPGI VQVLKKGSME ARENAAATLF SLSVIDENKV TIGALGAIPP LVVLLNEGTQ RGKKDAATAL
501: FNLCIYQGNK GKAIRAGVIP TLTRLLTEPG SGMVDEALAI LAILSSHPEG KAIIGSSDAV PSLVEFIRTG SPRNRENAAA VLVHLCSGDP QHLVEAQKLG
601: LMGPLIDLAG NGTDRGKRKA AQLLERISRL AEQQKETAVS QPEEEAEPTH PESTTEAADT

Arabidopsis Description

PUB13U-box domain-containing protein 13 [Source:UniProtKB/Swiss-Prot;Acc:Q9SNC6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.