Factsheet for HORVU6Hr1G041430.8

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
TargetP:	mitochondrion
YLoc:	mitochondrion

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU0Hr1G001280.1
HORVU2Hr1G016740.4
HORVU3Hr1G038010.1
HORVU3Hr1G079210.4
HORVU4Hr1G026290.3
HORVU5Hr1G014060.1
HORVU5Hr1G014070.2
HORVU5Hr1G044710.4

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G29340.1	HORVU0Hr1G001280.1	AT2G41100.1	17360592
AT1G29340.1	HORVU2Hr1G016740.4	AT2G41100.1	17360592
AT1G29340.1	HORVU3Hr1G038010.1	AT2G41100.1	17360592
AT1G29340.1	HORVU3Hr1G079210.4	AT2G41100.1	17360592
AT1G29340.1	HORVU4Hr1G026290.3	AT2G41100.1	17360592
AT1G29340.1	HORVU5Hr1G014060.1	AT2G41100.1	17360592
AT1G29340.1	HORVU5Hr1G014070.2	AT2G41100.1	17360592
AT1G29340.1	HORVU5Hr1G044710.4	AT2G41100.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6B01G222200.1	Wheat	cytosol	49.88	98.09
TraesCS6D01G180400.1	Wheat	plastid	85.8	97.52
TraesCS6A01G190700.1	Wheat	plastid	85.56	97.24
Os02t0234300-01	Rice	cytosol	59.1	83.82
EES04812	Sorghum	plastid	73.06	82.58
Zm00001d016225_P001	Maize	plastid	72.33	81.76
Zm00001d053544_P001	Maize	mitochondrion, plastid	69.66	81.42
GSMUA_Achr2P15530_001	Banana	mitochondrion	42.23	52.73
GSMUA_Achr7P09440_001	Banana	mitochondrion	40.41	52.19
GSMUA_Achr9P28820_001	Banana	mitochondrion	36.89	50.75
GSMUA_Achr10P...	Banana	mitochondrion	26.94	49.12
KRH11061	Soybean	mitochondrion, plastid	39.93	45.95
KRH21208	Soybean	mitochondrion	39.81	45.81
VIT_10s0003g01730.t01	Wine grape	mitochondrion	40.05	45.45
KRH42917	Soybean	mitochondrion	38.71	44.62
CDX90186	Canola	mitochondrion	38.59	44.6
Solyc02g072080.1.1	Tomato	cytosol, mitochondrion	39.08	44.48
PGSC0003DMT400073254	Potato	cytosol	38.84	44.2
KRH59027	Soybean	mitochondrion	38.35	44.2
CDY43332	Canola	mitochondrion	38.47	44.09
Bra032309.1-P	Field mustard	plastid	37.62	44.03
Bra010834.1-P	Field mustard	mitochondrion	38.35	43.95
CDY48332	Canola	mitochondrion, plastid	37.5	43.89
CDX94661	Canola	plastid	37.62	43.6
AT1G29340.1	Thale cress	plastid	38.47	43.48
CDX99816	Canola	plastid	37.26	42.4
Bra021899.1-P	Field mustard	plastid	31.43	39.18
CDY43686	Canola	plastid	31.43	39.18
CDY37666	Canola	cytosol, plastid	31.31	39.03
HORVU1Hr1G069990.1	Barley	plastid	28.88	34.9
HORVU3Hr1G081300.1	Barley	plastid	29.13	34.88
HORVU7Hr1G000780.1	Barley	cytosol	22.82	31.86
HORVU7Hr1G038870.1	Barley	plastid	10.92	31.36
HORVU5Hr1G021270.1	Barley	cytosol	24.27	29.33
HORVU5Hr1G021280.1	Barley	cytosol	24.27	29.07
HORVU7Hr1G061800.2	Barley	cytosol	22.09	28.26
HORVU2Hr1G067610.6	Barley	cytosol	16.14	28.06
HORVU7Hr1G121810.1	Barley	cytosol	20.87	26.83
HORVU4Hr1G059610.2	Barley	cytosol	25.0	26.68
HORVU3Hr1G081380.1	Barley	cytosol	13.35	24.89
HORVU5Hr1G059280.1	Barley	cytosol, plasma membrane	21.0	24.68
HORVU6Hr1G073280.1	Barley	cytosol	23.91	24.53
HORVU2Hr1G036080.15	Barley	plastid	13.23	23.8
HORVU3Hr1G113910.3	Barley	cytosol	20.75	20.41

Protein Annotations

Gene3D:1.25.10.10	Gene3D:1.25.10.110	Gene3D:3.30.40.10	MapMan:35.1	UniProt:A0A287U1E6	EMBL:AK364975
EMBL:AK368954	InterPro:ARM-like	InterPro:ARM-type_fold	InterPro:Armadillo	GO:GO:0003674	GO:GO:0003824
GO:GO:0004842	GO:GO:0005488	GO:GO:0005515	GO:GO:0006464	GO:GO:0006950	GO:GO:0008150
GO:GO:0008152	GO:GO:0009605	GO:GO:0009607	GO:GO:0009814	GO:GO:0009987	GO:GO:0016567
GO:GO:0016740	GO:GO:0019538	EnsemblPlantsGene:HORVU6Hr1G041430	EnsemblPlants:HORVU6Hr1G041430.8	InterPro:IPR000225	InterPro:IPR003613
InterPro:IPR011989	InterPro:IPR013083	PFAM:PF00514	PFAM:PF04564	PFscan:PS50176	PFscan:PS51698
PANTHER:PTHR23315	PANTHER:PTHR23315:SF76	SMART:SM00185	SMART:SM00504	SUPFAM:SSF48371	SUPFAM:SSF57850
UniParc:UPI000B474301	InterPro:Ubox_domain	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:

Description

RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:A0A287U1E6]

Coordinates

chrchr6H:-:228200862..228204004

Molecular Weight (calculated)

88413.1 Da

IEP (calculated)

9.645

GRAVY (calculated)

0.002

Length

824 amino acids

Sequence
(BLAST)

001: LLRVARHRLL PPLARPSGLA NANATRARVS LSLSDRGSRP FPPLVGPPPL STKPNAHLIA RQTQGSKKRG WTDFLPLFSS PPSLSISAGG RESGAGMDAP
101: ASASSPVEFL LRRPTPKRRR LPLAGAFFAP TALAGASLLR ALASLAAGLL AVPRPPSQPR NLAALARRLA LLSALLDSLL LDAPDRFSDA ANLCFRELYV
201: VLFRADLLVS YVASAGRAWA LLRGGHLAAS FRDLDAELAV VLDVIPAASI RLSHDATGHL DLLRSQCRRR APAQYHDPDE AALRDRLLAA VQKFELGQPP
301: DTAPLKSLLS DIGISDAASC QAEIDYLEEQ ILSQDEDTDL LLVGGVLALL RYSLFSQFDP GNAKAVRYWP SAGNLQRLPS WGGGGCEDTS FSVPKEFSCP
401: ISLDLMRDPV VASTGQTYDR PSIIQWIGEG HSTCPNSGQA LADNRLVPNC ALRSLISQWC GMYCFQYDSP ESNEGMAECV ATACSSKAAI EANKATARIL
501: VRMLVERSDS SKAVAAKEIR LLAKAGKQNR AFIAELGAIP LLCRLLLSSD QIAQENAVTA LLNLSIYEPN KMRIMEQEGC LWLIVSVLQN GWTTEARENA
601: AATLFSLSVV HDYKKMIMNE PGALEKLACM LKKGTPRGRK DAVMALFNLS THAESSARML ESSAVVALIE SLRNDTVSEE AAGALALLMK QPSVVHHVGS
701: SETVISSLVG LMRRGTPKGK ENAVSALYEI CRRGGSTLVR RVAKIPGLNT VIQNIMLTGT KRAKKKASLI VKMCQRSQMP SAMSLGTSLR AVDHSLVGNS
801: SLRRAASFGS GELSNPVSIS VHVP

Best Arabidopsis Sequence Match ( AT1G29340.1 )
(BLAST)

001: MASAAIFSSL RRRRSPSLEA FLAPVDLSGV ALVQTLASIS SEVVSCFTSV RFSFQRKNAR SLIRKIEIFV VLFEFLVDSN WGSTTTRTRA RRRSKSSVSE
101: STALLCLKEL YLLLYRSKIL VDYCAQSSKL WLLLQNPSIS GYFHDLNQEI STLLDVLPVN DLGLSDDIRE QIELLQRQSR KARLYIDKND ESLRESFYSF
201: LDGFENGKIP SSVDLRMFFV EKLGIRDSKS CRSEIEFLEE QIVNHDGDLE PTGSVINGFV AITRYCRFLL FGFEEDGMEW WIENNPKKPR KGFVAQEIGD
301: TFITVPKDFV CPISLDLMTD PVIISTGQTY DRNSIARWIE EGHCTCPKTG QMLMDSRIVP NRALKNLIVQ WCTASGISYE SEFTDSPNES FASALPTKAA
401: VEANKATVSI LIKYLADGSQ AAQTVAAREI RLLAKTGKEN RAYIAEAGAI PHLCRLLTSE NAIAQENSVT AMLNLSIYEK NKSRIMEEGD CLESIVSVLV
501: SGLTVEAQEN AAATLFSLSA VHEYKKRIAI VDQCVEALAL LLQNGTPRGK KDAVTALYNL STHPDNCSRM IEGGGVSSLV GALKNEGVAE EAAGALALLV
601: RQSLGAEAIG KEDSAVAGLM GMMRCGTPRG KENAVAALLE LCRSGGAAVA EKVLRAPAIA GLLQTLLFTG TKRARRKAAS LARVFQRREN AAMRSGVYGF
701: VGNTNGNRDG GFTTDVSVPI SISISVPVL

Arabidopsis Description

PUB17RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:A0A178WA68]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.