CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 5
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra010834.1-P	Field mustard	mitochondrion	98.74	97.91
CDY43332	Canola	mitochondrion	97.34	96.52
CDX94661	Canola	plastid	86.68	86.92
AT1G29340.1	Thale cress	plastid	87.1	85.19
CDY48332	Canola	mitochondrion, plastid	83.17	84.23
CDX99816	Canola	plastid	83.73	82.46
KRH21208	Soybean	mitochondrion	69.85	69.55
KRH11061	Soybean	mitochondrion, plastid	69.71	69.41
KRH59027	Soybean	mitochondrion	68.86	68.67
KRH42917	Soybean	mitochondrion	67.88	67.69
Solyc02g072080.1.1	Tomato	cytosol, mitochondrion	66.76	65.75
PGSC0003DMT400073254	Potato	cytosol	66.62	65.61
VIT_10s0003g01730.t01	Wine grape	mitochondrion	65.78	64.6
CDY37666	Canola	cytosol, plastid	55.68	60.06
CDY43686	Canola	plastid	55.54	59.91
GSMUA_Achr2P15530_001	Banana	mitochondrion	49.93	53.94
GSMUA_Achr7P09440_001	Banana	mitochondrion	47.97	53.6
TraesCS6B01G222200.1	Wheat	cytosol	31.0	52.74
GSMUA_Achr9P28820_001	Banana	mitochondrion	43.34	51.59
GSMUA_Achr10P...	Banana	mitochondrion	31.98	50.44
Os02t0234300-01	Rice	cytosol	39.55	48.54
Zm00001d053544_P001	Maize	mitochondrion, plastid	46.28	46.81
Zm00001d016225_P001	Maize	plastid	47.41	46.36
EES04812	Sorghum	plastid	46.7	45.68
TraesCS6D01G180400.1	Wheat	plastid	44.6	43.86
TraesCS6A01G190700.1	Wheat	plastid	44.6	43.86
HORVU6Hr1G041430.8	Barley	mitochondrion	44.6	38.59
CDX71307	Canola	cytosol	34.92	37.0
CDY31406	Canola	cytosol	34.92	36.94
CDY28679	Canola	cytosol	13.04	35.36
CDX78273	Canola	cytosol	31.28	35.17
CDX68380	Canola	cytosol	25.95	34.77
CDX68379	Canola	cytosol	31.56	34.19
CDX86080	Canola	cytosol	31.42	34.15
CDY25764	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	28.05	34.01
CDX99112	Canola	cytosol	31.14	33.89
CDY12497	Canola	cytosol	28.19	33.67
CDY21412	Canola	cytosol, endoplasmic reticulum	27.77	32.57
CDX77213	Canola	cytosol	29.17	32.35
CDY04746	Canola	cytosol, endoplasmic reticulum	27.63	32.35
CDX96295	Canola	cytosol, plasma membrane	27.91	32.31
CDY31736	Canola	cytosol	29.03	32.24
CDX72769	Canola	cytosol	27.21	31.7
CDY04747	Canola	cytosol, golgi	19.5	31.52
CDY68037	Canola	cytosol	28.19	30.69
CDX95193	Canola	cytosol	28.05	30.53
CDX74298	Canola	plastid	14.87	29.94
CDY32692	Canola	peroxisome	14.73	29.75
CDX91947	Canola	plastid	14.73	29.75
CDX74050	Canola	cytosol	18.79	29.39
CDY71737	Canola	cytosol	18.93	29.22
CDY02828	Canola	cytosol	14.45	29.1
CDY28059	Canola	cytosol	18.79	29.0
CDY08002	Canola	cytosol	18.37	28.79
CDY38506	Canola	cytosol	17.53	27.41
CDY68352	Canola	cytosol	17.53	27.41
CDY54132	Canola	cytosol	25.95	27.21
CDY24520	Canola	cytosol	25.67	27.15
CDY18649	Canola	cytosol, plastid	26.51	26.54
CDX76873	Canola	cytosol, plastid	27.63	26.37
CDX81323	Canola	cytosol, plastid	26.37	26.0
CDY55050	Canola	cytosol	24.96	25.57
CDX90518	Canola	plastid	16.27	25.49
CDX93411	Canola	mitochondrion	24.82	25.36
CDY04344	Canola	cytosol	11.22	25.08
CDY09688	Canola	cytosol	15.85	24.89
CDY57440	Canola	cytosol	23.0	24.89
CDY12838	Canola	cytosol	24.26	24.75
CDX73439	Canola	plastid	31.14	24.64
CDY04342	Canola	cytosol	11.5	24.62
CDX78262	Canola	cytosol	23.42	23.79
CDX73449	Canola	cytosol	23.28	23.58
CDY38931	Canola	cytosol	19.92	23.09
CDY02891	Canola	cytosol	23.7	22.93
CDY64696	Canola	cytosol, extracellular, mitochondrion, plastid	23.7	22.9
CDX70810	Canola	cytosol	14.59	22.03
CDY51235	Canola	extracellular, golgi	14.73	20.23
CDY46092	Canola	endoplasmic reticulum, golgi, plasma membrane, plastid	27.63	19.07
CDX70805	Canola	cytosol	16.41	7.59
CDY51234	Canola	cytosol	15.85	6.82

Protein Annotations

Gene3D:1.25.10.10	Gene3D:3.30.40.10	MapMan:35.1	GO:A0A078DLN4	InterPro:ARM-like	InterPro:ARM-type_fold
InterPro:Armadillo	EnsemblPlants:CDX90186	ProteinID:CDX90186	ProteinID:CDX90186.1	GO:GO:0003674	GO:GO:0003824
GO:GO:0004842	GO:GO:0005488	GO:GO:0005515	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00150736001	InterPro:IPR000225
InterPro:IPR003613	InterPro:IPR011989	InterPro:IPR013083	PFAM:PF00514	PFAM:PF04564	PFscan:PS50176
PFscan:PS51698	PANTHER:PTHR23315	PANTHER:PTHR23315:SF76	SMART:SM00185	SMART:SM00504	SUPFAM:SSF48371
SUPFAM:SSF57850	UniPathway:UPA00143	UniParc:UPI0004EDCFC4	InterPro:Ubox_domain	InterPro:Znf_RING/FYVE/PHD	SEG:seg

Description

BnaA08g17980D

Coordinates

chrLK031862:+:550268..552409

Molecular Weight (calculated)

78016.4 Da

IEP (calculated)

6.350

GRAVY (calculated)

-0.079

Length

713 amino acids

Sequence
(BLAST)

001: MATAAIFSSL RRRRSPSLEA FLSPVDLSGL PLVQTLAAIS TEIISSFSGT RFSFQRRNAR SLIRKIEIFL VLFESLAESR WGSTPSSSST ALLCLKELYL
101: LLYRSKILLD YCAHSSKLWL LLQTQSISGY FHDLNQEIST LLDVFPVNDL SLSDDVREQI ELLQSQSRRS RLYIDSNDES LRRTFYSFLD GFENGEIPNS
201: IALRSFFAEK LQIKDSKSCG NEIEFLEEQI ANHDGDVEPT GSVINGFVAI TRYCRFLLFG FEEEWRIKNN NPNKKSKRDG DGFITVPKDF VCPISLDLMS
301: DPVIISTGQT YDRTSIARWI EEGHCTCPKT GQMLMDSRIV PNRALKNLIV QWCAASGVSY ESEFVTDSST NEGFVSGLPT KATVEANKAT VSILIEYLAD
401: GSEAAQTVAA REIRLLAKTG KENREFIAEA GAIPHLRRLL KSEDAVAQEN SVTAMLNLSI YEKNKSRIME EEDCLEAIVS VLVSGLTVEA QENAAATLFS
501: LSAVHEYKKR IAMADQCVEA LASLLQNGTP RGKKDAVTAL YNLSTHPENC SRMIEGGGVS SLVGALKNEG VAEEAAGALA LLVRQSLGAE AIGKEESAVT
601: GLMGMMRCGT PRGKENAVAA LLELCRRGGA AVAERVLRAP AIAGVLQTLL FTGTKRARRK AASLARVFQR REHAAMRAGG YGFVGDVNGN RDGGNFTTDV
701: SVPMSISISV PVL

Best Arabidopsis Sequence Match ( AT1G29340.1 )
(BLAST)

001: MASAAIFSSL RRRRSPSLEA FLAPVDLSGV ALVQTLASIS SEVVSCFTSV RFSFQRKNAR SLIRKIEIFV VLFEFLVDSN WGSTTTRTRA RRRSKSSVSE
101: STALLCLKEL YLLLYRSKIL VDYCAQSSKL WLLLQNPSIS GYFHDLNQEI STLLDVLPVN DLGLSDDIRE QIELLQRQSR KARLYIDKND ESLRESFYSF
201: LDGFENGKIP SSVDLRMFFV EKLGIRDSKS CRSEIEFLEE QIVNHDGDLE PTGSVINGFV AITRYCRFLL FGFEEDGMEW WIENNPKKPR KGFVAQEIGD
301: TFITVPKDFV CPISLDLMTD PVIISTGQTY DRNSIARWIE EGHCTCPKTG QMLMDSRIVP NRALKNLIVQ WCTASGISYE SEFTDSPNES FASALPTKAA
401: VEANKATVSI LIKYLADGSQ AAQTVAAREI RLLAKTGKEN RAYIAEAGAI PHLCRLLTSE NAIAQENSVT AMLNLSIYEK NKSRIMEEGD CLESIVSVLV
501: SGLTVEAQEN AAATLFSLSA VHEYKKRIAI VDQCVEALAL LLQNGTPRGK KDAVTALYNL STHPDNCSRM IEGGGVSSLV GALKNEGVAE EAAGALALLV
601: RQSLGAEAIG KEDSAVAGLM GMMRCGTPRG KENAVAALLE LCRSGGAAVA EKVLRAPAIA GLLQTLLFTG TKRARRKAAS LARVFQRREN AAMRSGVYGF
701: VGNTNGNRDG GFTTDVSVPI SISISVPVL

Arabidopsis Description

PUB17RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:A0A178WA68]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.