CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, endoplasmic reticulum, vacuole, cytosol, plasma membrane, golgi

Predictor Summary:

nucleus 2
extracellular 4
endoplasmic reticulum 4
vacuole 4
plasma membrane 4
golgi 4
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, secretory
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	cytosol
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra012355.1-P	Field mustard	plasma membrane	98.81	98.81
CDY12497	Canola	cytosol	97.79	96.31
CDY04746	Canola	cytosol, endoplasmic reticulum	88.1	85.06
CDY21412	Canola	cytosol, endoplasmic reticulum	87.93	85.03
AT1G23030.1	Thale cress	cytosol	86.73	83.33
CDY04747	Canola	cytosol, golgi	61.39	81.86
CDX96295	Canola	cytosol, plasma membrane	76.7	73.21
CDX72769	Canola	cytosol	75.0	72.06
KRH50347	Soybean	nucleus	65.14	58.56
VIT_01s0011g04770.t01	Wine grape	cytosol	63.44	58.37
KRG89279	Soybean	cytosol	64.46	58.22
PGSC0003DMT400015349	Potato	cytosol	60.71	55.18
Solyc04g007640.2.1	Tomato	cytosol	59.52	54.1
PGSC0003DMT400078473	Potato	cytosol	59.69	54.0
Solyc05g008230.2.1	Tomato	cytosol	59.18	53.54
Zm00001d000381_P001	Maize	cytosol	51.53	47.49
TraesCS6D01G274500.1	Wheat	cytosol	51.53	47.27
EES07310	Sorghum	cytosol	51.19	47.18
TraesCS6B01G324000.1	Wheat	cytosol	51.53	47.12
TraesCS6A01G293600.1	Wheat	cytosol	51.36	47.11
Os02t0732200-01	Rice	cytosol	51.02	47.1
CDY28679	Canola	cytosol	20.41	45.63
GSMUA_Achr9P15600_001	Banana	cytosol	48.3	42.01
CDX86080	Canola	cytosol	45.41	40.7
CDX99112	Canola	cytosol	45.07	40.46
CDX78273	Canola	cytosol	43.54	40.38
CDX68380	Canola	cytosol	36.22	40.04
CDX68379	Canola	cytosol	44.56	39.82
CDY31736	Canola	cytosol	41.84	38.32
CDX77213	Canola	cytosol	41.67	38.1
HORVU6Hr1G073280.1	Barley	cytosol	51.53	37.73
CDY32692	Canola	peroxisome	21.6	35.98
CDX91947	Canola	plastid	21.6	35.98
CDX74298	Canola	plastid	21.43	35.59
CDY02828	Canola	cytosol	21.26	35.31
CDY28059	Canola	cytosol	27.55	35.06
CDY71737	Canola	cytosol	27.21	34.63
CDX74050	Canola	cytosol	26.36	33.99
CDY08002	Canola	cytosol	25.85	33.41
CDY68037	Canola	cytosol	36.39	32.67
CDX95193	Canola	cytosol	36.05	32.37
CDY68352	Canola	cytosol	23.3	30.04
CDY38506	Canola	cytosol	22.79	29.39
CDX73439	Canola	plastid	43.37	28.3
CDX94661	Canola	plastid	34.18	28.27
CDX90186	Canola	mitochondrion	34.01	28.05
CDY37666	Canola	cytosol, plastid	30.95	27.53
CDY43686	Canola	plastid	30.95	27.53
CDY43332	Canola	mitochondrion	33.5	27.4
CDY18649	Canola	cytosol, plastid	33.16	27.39
CDY48332	Canola	mitochondrion, plastid	32.65	27.27
CDX81323	Canola	cytosol, plastid	33.33	27.11
CDX99816	Canola	plastid	33.33	27.07
CDX76873	Canola	cytosol, plastid	34.35	27.04
CDX90518	Canola	plastid	20.41	26.37
CDY09688	Canola	cytosol	20.07	25.99
CDX78262	Canola	cytosol	30.95	25.93
CDX73449	Canola	cytosol	30.95	25.85
CDY57440	Canola	cytosol	28.74	25.64
CDY12838	Canola	cytosol	29.76	25.04
CDX71307	Canola	cytosol	28.4	24.81
CDY31406	Canola	cytosol	28.4	24.78
CDY02891	Canola	cytosol	30.61	24.42
CDY64696	Canola	cytosol, extracellular, mitochondrion, plastid	30.61	24.39
CDX70810	Canola	cytosol	19.56	24.36
CDY38931	Canola	cytosol	24.83	23.74
CDY51235	Canola	extracellular, golgi	20.41	23.12
CDX93411	Canola	mitochondrion	27.04	22.78
CDY55050	Canola	cytosol	26.87	22.7
CDY24520	Canola	cytosol	24.83	21.66
CDY54132	Canola	cytosol	24.66	21.32
CDY46092	Canola	endoplasmic reticulum, golgi, plasma membrane, plastid	34.01	19.36
CDY04344	Canola	cytosol	8.84	16.3
CDY04342	Canola	cytosol	9.18	16.22
CDX70805	Canola	cytosol	20.92	7.98
CDY51234	Canola	cytosol	20.07	7.12

Protein Annotations

Gene3D:1.25.10.10	MapMan:19.2.2.1.5.2.1	Gene3D:3.30.40.10	GO:A0A078GKG8	UniProt:A0A078GKG8	InterPro:ARM-like
InterPro:ARM-type_fold	InterPro:Armadillo	EnsemblPlants:CDY25764	ProteinID:CDY25764	ProteinID:CDY25764.1	ncoils:Coil
GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0005515	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538
EnsemblPlantsGene:GSBRNA2T00033155001	InterPro:IPR000225	InterPro:IPR003613	InterPro:IPR011989	InterPro:IPR013083	PFAM:PF00514
PFAM:PF04564	PFscan:PS50176	PFscan:PS51698	PANTHER:PTHR23315	PANTHER:PTHR23315:SF52	SMART:SM00185
SMART:SM00504	SUPFAM:SSF48371	SUPFAM:SSF57850	UniPathway:UPA00143	UniParc:UPI0004EF1A9B	InterPro:Ubox_domain
InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:	:

Description

BnaA07g10180DRING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:A0A078GKG8]

Coordinates

chrLK032180:+:168099..170591

Molecular Weight (calculated)

64751.3 Da

IEP (calculated)

8.328

GRAVY (calculated)

-0.138

Length

588 amino acids

Sequence
(BLAST)

001: MAGVIIPPAS LLKLIAEIAE IPLNAGVFKK DCTDLTRRVS LLTHLIEEIK DSNQIASSSS ENDWWSDLVV ALQASKRLLS SARDSSDVAA KRISFQFQCV
101: TWKLEKALSN LPYDLYDISD EVKEQVELAR TQLRRATQRY GSLNSNKFSS ALSELMERDV KIKAEEEKDE SVAETIHLAE EKKQLTKSPS ISLAFYLSKD
201: ADSERLDKMV TKNTDESSKL TVPVDFLCPV SLELMKDPVI VSTGQTYERA YIQRWIDCGN LTCPKTQQKL QNFTLTPNYV LRSLISRWCT EHNIKQPGNG
301: RCGDMSMIRS LVRSLSNRSL EERRNAVSEI RSLSKRSTDN RIMIAEAGAI PVLVNLLTSE DVATQENAIT CLLNLSIYDN NKELIMFAGA VTSIVQVLRA
401: GTMEARENAA ATLFSLSLAD ENKIIIGGSG AIPALVDLLE NGTPRGKKDA ATALFNLCIY QGNKGRAVRA GIVPALVKML SETSSQRMMV DEALTILSVL
501: ASNLDAKSAM VKANTLPALI GILQTGQGRN RENAAAILLS LCKRDNERLV LIGRLGAVVP LMELSKNGTE RGQRKAVSLL ELLRKACQ

Best Arabidopsis Sequence Match ( AT1G23030.1 )
(BLAST)

001: MAGGIVSPAS LLDLIADIVE IPLNTGMFKK DCADLTRRVC LLTHLLEEIR DSTPIDSAAS SSSENDWWSD LVVGLQAAKR LLSTARFQAR DSSDGAAKRI
101: SFQFQCVTWK LEKALSNLPY DLYDISDEVG EQVELARSQL RRAMQRYGSL NSNKFSSALS EPMERDGFSN VIKIKAEEKL ESVSETLHFG EEEEKQSSPP
201: LRRSSSISLA YYLSKDADTD RLDKMVNKNT DESKKSDKLT IPVDFLCPVS LELMKDPVIV ATGQTYERAY IQRWIDCGNL TCPKTQQKLE NFTLTPNYVL
301: RSLISRWCAE HNIEQPAGYI NGRTKNSGDM SVIRALVQRL SSRSTEDRRN AVSEIRSLSK RSTDNRILIA EAGAIPVLVN LLTSEDVATQ ENAITCVLNL
401: SIYENNKELI MFAGAVTSIV QVLRAGTMEA RENAAATLFS LSLADENKII IGGSGAIPAL VDLLENGTPR GKKDAATALF NLCIYHGNKG RAVRAGIVTA
501: LVKMLSDSTR HRMVDEALTI LSVLANNQDA KSAIVKANTL PALIGILQTD QTRNRENAAA ILLSLCKRDT EKLITIGRLG AVVPLMDLSK NGTERGKRKA
601: ISLLELLRKA CQ

Arabidopsis Description

PUB11RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:A0A178WCR1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.