Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX74050 | Canola | cytosol | 96.7 | 96.49 |
| Bra001247.1-P | Field mustard | cytosol | 96.48 | 96.27 |
| CDY28059 | Canola | cytosol | 89.89 | 88.53 |
| CDY71737 | Canola | cytosol | 89.45 | 88.1 |
| AT3G07360.1 | Thale cress | cytosol | 87.47 | 86.52 |
| VIT_00s0524g00030.t01 | Wine grape | cytosol | 59.34 | 60.13 |
| PGSC0003DMT400016998 | Potato | cytosol | 58.02 | 58.8 |
| Solyc09g056450.2.1 | Tomato | cytosol | 57.58 | 58.35 |
| KRH46608 | Soybean | cytosol | 58.9 | 58.13 |
| KRG99581 | Soybean | cytosol | 58.46 | 57.7 |
| VIT_04s0043g00840.t01 | Wine grape | cytosol | 56.48 | 56.48 |
| KRH68828 | Soybean | cytosol | 52.09 | 55.12 |
| KRG97080 | Soybean | cytosol, nucleus | 52.31 | 54.09 |
| GSMUA_Achr6P06560_001 | Banana | cytosol | 43.52 | 53.08 |
| GSMUA_Achr10P... | Banana | cytosol | 41.32 | 50.27 |
| GSMUA_Achr9P01670_001 | Banana | cytosol | 49.67 | 48.5 |
| KRG92593 | Soybean | cytosol | 46.37 | 47.63 |
| PGSC0003DMT400011486 | Potato | cytosol | 37.14 | 47.34 |
| Os02t0488600-01 | Rice | cytosol, nucleus | 43.96 | 47.28 |
| Solyc04g050780.1.1 | Tomato | cytosol | 43.96 | 46.4 |
| PGSC0003DMT400039084 | Potato | cytosol | 44.4 | 45.6 |
| Solyc04g050770.1.1 | Tomato | cytosol | 43.74 | 44.92 |
| Zm00001d016501_P001 | Maize | cytosol | 45.49 | 44.52 |
| EES06804 | Sorghum | cytosol | 44.84 | 43.97 |
| Os04t0348400-01 | Rice | cytosol | 42.86 | 42.48 |
| TraesCS2D01G275400.1 | Wheat | nucleus | 42.64 | 42.17 |
| TraesCS2B01G294100.1 | Wheat | nucleus | 42.64 | 42.17 |
| TraesCS2A01G276400.1 | Wheat | nucleus | 42.64 | 42.17 |
| HORVU2Hr1G067610.6 | Barley | cytosol | 43.3 | 41.56 |
| CDY68352 | Canola | cytosol | 38.46 | 38.38 |
| CDY38506 | Canola | cytosol | 38.02 | 37.94 |
| CDY28679 | Canola | cytosol | 19.78 | 34.22 |
| CDX70810 | Canola | cytosol | 32.31 | 31.14 |
| CDX74298 | Canola | plastid | 21.32 | 27.4 |
| CDY51235 | Canola | extracellular, golgi | 31.21 | 27.36 |
| CDX91947 | Canola | plastid | 21.1 | 27.2 |
| CDY32692 | Canola | peroxisome | 21.1 | 27.2 |
| CDY02828 | Canola | cytosol | 20.66 | 26.55 |
| CDY25764 | Canola | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 33.41 | 25.85 |
| CDY21412 | Canola | cytosol, endoplasmic reticulum | 33.85 | 25.33 |
| CDY12497 | Canola | cytosol | 33.19 | 25.29 |
| CDY04746 | Canola | cytosol, endoplasmic reticulum | 33.85 | 25.29 |
| CDX78273 | Canola | cytosol | 34.51 | 24.76 |
| CDX96295 | Canola | cytosol, plasma membrane | 33.19 | 24.51 |
| CDY31736 | Canola | cytosol | 34.07 | 24.14 |
| CDX72769 | Canola | cytosol | 32.31 | 24.02 |
| CDX77213 | Canola | cytosol | 33.63 | 23.79 |
| CDX68379 | Canola | cytosol | 32.97 | 22.8 |
| CDX99112 | Canola | cytosol | 32.75 | 22.75 |
| CDX86080 | Canola | cytosol | 32.75 | 22.71 |
| CDY68037 | Canola | cytosol | 31.87 | 22.14 |
| CDX95193 | Canola | cytosol | 31.65 | 21.98 |
| CDX68380 | Canola | cytosol | 25.27 | 21.62 |
| CDY04747 | Canola | cytosol, golgi | 20.66 | 21.32 |
| CDY09688 | Canola | cytosol | 20.44 | 20.48 |
| CDX90518 | Canola | plastid | 20.22 | 20.22 |
| CDX78262 | Canola | cytosol | 30.55 | 19.8 |
| CDX73449 | Canola | cytosol | 30.55 | 19.74 |
| CDY18649 | Canola | cytosol, plastid | 30.77 | 19.66 |
| CDX81323 | Canola | cytosol, plastid | 30.77 | 19.36 |
| CDX76873 | Canola | cytosol, plastid | 31.65 | 19.28 |
| CDY64696 | Canola | cytosol, extracellular, mitochondrion, plastid | 30.55 | 18.83 |
| CDY02891 | Canola | cytosol | 30.33 | 18.72 |
| CDY48332 | Canola | mitochondrion, plastid | 28.57 | 18.47 |
| CDX90186 | Canola | mitochondrion | 28.79 | 18.37 |
| CDX94661 | Canola | plastid | 28.57 | 18.28 |
| CDY43332 | Canola | mitochondrion | 28.57 | 18.08 |
| CDY57440 | Canola | cytosol | 26.15 | 18.06 |
| CDY12838 | Canola | cytosol | 27.69 | 18.03 |
| CDX99816 | Canola | plastid | 28.57 | 17.96 |
| CDY31406 | Canola | cytosol | 26.59 | 17.95 |
| CDX71307 | Canola | cytosol | 26.37 | 17.83 |
| CDY37666 | Canola | cytosol, plastid | 25.27 | 17.4 |
| CDX73439 | Canola | plastid | 34.07 | 17.2 |
| CDY43686 | Canola | plastid | 24.84 | 17.1 |
| CDY38931 | Canola | cytosol | 22.86 | 16.91 |
| CDY24520 | Canola | cytosol | 23.3 | 15.73 |
| CDY54132 | Canola | cytosol | 23.3 | 15.59 |
| CDY55050 | Canola | cytosol | 23.52 | 15.37 |
| CDX93411 | Canola | mitochondrion | 23.52 | 15.33 |
| CDY46092 | Canola | endoplasmic reticulum, golgi, plasma membrane, plastid | 31.21 | 13.75 |
| CDY04344 | Canola | cytosol | 9.01 | 12.85 |
| CDY04342 | Canola | cytosol | 8.79 | 12.01 |
| CDX70805 | Canola | cytosol | 32.31 | 9.54 |
| CDY51234 | Canola | cytosol | 33.41 | 9.17 |
Protein Annotations
| MapMan:19.2.2.1.5.2.1 | Gene3D:3.30.40.10 | GO:A0A078F4L3 | UniProt:A0A078F4L3 | InterPro:ARM-type_fold | InterPro:Armadillo |
| EnsemblPlants:CDY08002 | ProteinID:CDY08002 | ProteinID:CDY08002.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0004842 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009987 | GO:GO:0016567 | GO:GO:0016740 | GO:GO:0019538 | EnsemblPlantsGene:GSBRNA2T00125245001 | InterPro:IPR000225 |
| InterPro:IPR003613 | InterPro:IPR013083 | PFAM:PF00514 | PFAM:PF04564 | PFscan:PS51698 | PANTHER:PTHR23315 |
| PANTHER:PTHR23315:SF227 | SMART:SM00185 | SMART:SM00504 | SUPFAM:SSF48371 | SUPFAM:SSF57850 | UniPathway:UPA00143 |
| UniParc:UPI0004EE4199 | InterPro:Ubox_domain | InterPro:Znf_RING/FYVE/PHD | SEG:seg | : | : |
Description
BnaC03g35210DRING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:A0A078F4L3]
Coordinates
chrLK031982:-:526276..528323
Molecular Weight (calculated)
50640.2 Da
IEP (calculated)
7.446
GRAVY (calculated)
-0.227
Length
455 amino acids
Sequence
(BLAST)
(BLAST)
001: MAKTGFFDSD PTAIAKAKEL KLEMKKLLSN IEEEDGLSVQ RIDQLQETLS AFRQATAMRK MEKSSSLEML ETAVSFPDEF RCPLSNELMR DPVVLASGQT
101: YDKLFIQRWL SSGNRTCPKT EQVLPHTALT PNVLIRDMIS KWCKTVGLET TNLYESKKAV TRSDREVFNS LLCKVSSSNI QDQRSAAKEL RLLTKKGTEF
201: RALFGESSEG ITRLVSPLLL NRDEDLEEDV ITTLLNISIH DDSNKKLVCE NPNVIPLLID ALTRGTVATR SNAAAAIFTL SALDSNKALI GKSGILKPLI
301: DLLEEGNPLA IKDAAAAIFT LCIAHENRSR AVKDGAVRVL GKKISEGLYV DELLALLAML VTHWKAVEEL GELGGVSWLL EITRESECKR NKENAIVILH
401: TICFSDRTMW KEIREEESSH GTITRLAREG TSRAQRKANG ILDRLRKAMN LTHTA
101: YDKLFIQRWL SSGNRTCPKT EQVLPHTALT PNVLIRDMIS KWCKTVGLET TNLYESKKAV TRSDREVFNS LLCKVSSSNI QDQRSAAKEL RLLTKKGTEF
201: RALFGESSEG ITRLVSPLLL NRDEDLEEDV ITTLLNISIH DDSNKKLVCE NPNVIPLLID ALTRGTVATR SNAAAAIFTL SALDSNKALI GKSGILKPLI
301: DLLEEGNPLA IKDAAAAIFT LCIAHENRSR AVKDGAVRVL GKKISEGLYV DELLALLAML VTHWKAVEEL GELGGVSWLL EITRESECKR NKENAIVILH
401: TICFSDRTMW KEIREEESSH GTITRLAREG TSRAQRKANG ILDRLRKAMN LTHTA
001: MAKTGVFDSD PTAIAKAKEL KREMKKLLIK IDDEDDLGVQ TIDQLQDALS ALREATMRKM AKSSSLEMLE TVSCPEEFRC PLSNELMRDP VVLASGQTYD
101: KLFIQKWLSS GNRTCPKTQQ VLPHTALTPN LLIREMISKW CKKNGLETKS QYHPNLVNED ETVTRSDREI FNSLLCKVSS SNLQDQKSAA KELRLLTRKG
201: TEFRALFGES PDEITRLVNP LLHGSNPDEK LQEDVVTTLL NISIHDDSNK KLVCENPNVI PLLIDALRRG TVATRSNAAA AIFTLSALDS NKVLIGKSGI
301: LKPLIDLLEE GNPLAIKDVA AAIFTLCIAH ENRSRAVRDG AVRVLGKKIS NGLYVDELLA ILAMLVTHWK AVEELGELGG VSWLLKITRE SECKRNKENA
401: IVILHTICFS DRTKWKEIKE EENAHGTITK LSREGTSRAQ RKANGILDRL RKAMNLTHTA
101: KLFIQKWLSS GNRTCPKTQQ VLPHTALTPN LLIREMISKW CKKNGLETKS QYHPNLVNED ETVTRSDREI FNSLLCKVSS SNLQDQKSAA KELRLLTRKG
201: TEFRALFGES PDEITRLVNP LLHGSNPDEK LQEDVVTTLL NISIHDDSNK KLVCENPNVI PLLIDALRRG TVATRSNAAA AIFTLSALDS NKVLIGKSGI
301: LKPLIDLLEE GNPLAIKDVA AAIFTLCIAH ENRSRAVRDG AVRVLGKKIS NGLYVDELLA ILAMLVTHWK AVEELGELGG VSWLLKITRE SECKRNKENA
401: IVILHTICFS DRTKWKEIKE EENAHGTITK LSREGTSRAQ RKANGILDRL RKAMNLTHTA
Arabidopsis Description
PUB9RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:A0A178VJC7]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.