Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 3
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY24520 | Canola | cytosol | 94.12 | 94.96 |
| CDY04344 | Canola | cytosol | 37.06 | 79.0 |
| CDY04342 | Canola | cytosol | 37.94 | 77.48 |
| AT1G60190.1 | Thale cress | cytosol, plastid | 77.21 | 76.53 |
| CDY55050 | Canola | cytosol | 61.91 | 60.49 |
| CDX93411 | Canola | mitochondrion | 61.76 | 60.17 |
| VIT_01s0026g00190.t01 | Wine grape | cytosol | 43.68 | 43.48 |
| PGSC0003DMT400082693 | Potato | cytosol | 15.29 | 42.62 |
| KRH69547 | Soybean | cytosol, plastid | 43.53 | 41.51 |
| Solyc05g005670.1.1 | Tomato | cytosol, mitochondrion | 40.59 | 40.29 |
| PGSC0003DMT400090858 | Potato | cytosol, mitochondrion | 26.91 | 40.22 |
| PGSC0003DMT400095861 | Potato | cytosol, plasma membrane | 33.09 | 40.18 |
| TraesCS2A01G475600.1 | Wheat | cytosol, plasma membrane | 34.56 | 34.01 |
| TraesCS2B01G499300.1 | Wheat | plasma membrane | 34.26 | 33.82 |
| Zm00001d050308_P001 | Maize | mitochondrion, plasma membrane | 34.26 | 33.57 |
| Os09t0378700-00 | Rice | plasma membrane, plastid | 35.15 | 33.57 |
| Zm00001d020332_P001 | Maize | cytosol | 34.41 | 33.52 |
| GSMUA_Achr9P14560_001 | Banana | cytosol | 28.82 | 33.5 |
| HORVU5Hr1G059280.1 | Barley | cytosol, plasma membrane | 34.41 | 33.38 |
| TraesCS5D01G204700.1 | Wheat | cytosol, plasma membrane | 34.26 | 33.24 |
| TraesCS2D01G475600.1 | Wheat | cytosol, plasma membrane | 33.68 | 33.24 |
| TraesCS5B01G197400.1 | Wheat | cytosol, plasma membrane, plastid | 33.97 | 32.95 |
| KXG35540 | Sorghum | plasma membrane | 34.56 | 32.82 |
| TraesCS5A01G198800.1 | Wheat | cytosol, plasma membrane | 33.53 | 32.52 |
| OQU80426 | Sorghum | endoplasmic reticulum, plasma membrane | 34.12 | 32.49 |
| GSMUA_Achr3P06160_001 | Banana | plastid | 26.18 | 31.39 |
| Os08t0415600-00 | Rice | cytosol | 32.06 | 30.4 |
| CDY28679 | Canola | cytosol | 10.59 | 27.38 |
| CDX71307 | Canola | cytosol | 26.76 | 27.04 |
| CDY31406 | Canola | cytosol | 26.62 | 26.85 |
| CDY43686 | Canola | plastid | 25.74 | 26.48 |
| CDX94661 | Canola | plastid | 27.65 | 26.44 |
| CDX90186 | Canola | mitochondrion | 27.21 | 25.95 |
| CDY37666 | Canola | cytosol, plastid | 25.15 | 25.87 |
| CDY48332 | Canola | mitochondrion, plastid | 26.76 | 25.85 |
| CDY43332 | Canola | mitochondrion | 27.21 | 25.73 |
| CDX68380 | Canola | cytosol | 19.85 | 25.38 |
| CDX99816 | Canola | plastid | 26.47 | 24.86 |
| CDY25764 | Canola | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 21.32 | 24.66 |
| CDX86080 | Canola | cytosol | 23.68 | 24.54 |
| CDY04747 | Canola | cytosol, golgi | 15.88 | 24.49 |
| CDX99112 | Canola | cytosol | 23.24 | 24.12 |
| CDX77213 | Canola | cytosol | 22.79 | 24.11 |
| CDY21412 | Canola | cytosol, endoplasmic reticulum | 21.47 | 24.01 |
| CDX68379 | Canola | cytosol | 23.24 | 24.01 |
| CDY04746 | Canola | cytosol, endoplasmic reticulum | 21.47 | 23.97 |
| CDY12497 | Canola | cytosol | 21.03 | 23.95 |
| CDX74050 | Canola | cytosol | 15.88 | 23.68 |
| CDY28059 | Canola | cytosol | 16.03 | 23.59 |
| CDX96295 | Canola | cytosol, plasma membrane | 21.32 | 23.54 |
| CDY31736 | Canola | cytosol | 22.21 | 23.52 |
| CDY68037 | Canola | cytosol | 22.5 | 23.36 |
| CDY08002 | Canola | cytosol | 15.59 | 23.3 |
| CDX95193 | Canola | cytosol | 22.35 | 23.21 |
| CDY71737 | Canola | cytosol | 15.74 | 23.16 |
| CDX72769 | Canola | cytosol | 20.74 | 23.04 |
| CDX78273 | Canola | cytosol | 20.88 | 22.4 |
| CDX91947 | Canola | plastid | 11.62 | 22.38 |
| CDX74298 | Canola | plastid | 11.62 | 22.32 |
| CDY02828 | Canola | cytosol | 11.47 | 22.03 |
| CDY32692 | Canola | peroxisome | 11.18 | 21.53 |
| CDY68352 | Canola | cytosol | 13.68 | 20.39 |
| CDY38506 | Canola | cytosol | 13.24 | 19.74 |
| CDY09688 | Canola | cytosol | 13.09 | 19.6 |
| CDX76873 | Canola | cytosol, plastid | 21.03 | 19.14 |
| CDX90518 | Canola | plastid | 12.79 | 19.12 |
| CDY18649 | Canola | cytosol, plastid | 20.0 | 19.1 |
| CDX81323 | Canola | cytosol, plastid | 20.15 | 18.95 |
| CDX78262 | Canola | cytosol | 19.56 | 18.95 |
| CDX73449 | Canola | cytosol | 19.12 | 18.47 |
| CDY64696 | Canola | cytosol, extracellular, mitochondrion, plastid | 20.0 | 18.43 |
| CDY02891 | Canola | cytosol | 19.85 | 18.32 |
| CDY38931 | Canola | cytosol | 16.03 | 17.72 |
| CDY57440 | Canola | cytosol | 16.91 | 17.45 |
| CDY12838 | Canola | cytosol | 17.79 | 17.31 |
| CDX70810 | Canola | cytosol | 11.47 | 16.53 |
| CDX73439 | Canola | plastid | 20.88 | 15.76 |
| CDY51235 | Canola | extracellular, golgi | 11.76 | 15.41 |
| CDY46092 | Canola | endoplasmic reticulum, golgi, plasma membrane, plastid | 21.18 | 13.94 |
| CDX70805 | Canola | cytosol | 12.06 | 5.32 |
| CDY51234 | Canola | cytosol | 12.06 | 4.95 |
Protein Annotations
| Gene3D:1.25.10.10 | MapMan:19.2.2.1.5.2.1 | Gene3D:3.30.40.10 | GO:A0A078IVU1 | UniProt:A0A078IVU1 | InterPro:ARM-like |
| InterPro:ARM-type_fold | InterPro:Armadillo | EnsemblPlants:CDY54132 | ProteinID:CDY54132 | ProteinID:CDY54132.1 | GO:GO:0003674 |
| GO:GO:0003824 | GO:GO:0004842 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0006464 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016567 | GO:GO:0016740 | GO:GO:0019538 | EnsemblPlantsGene:GSBRNA2T00013419001 |
| InterPro:IPR000225 | InterPro:IPR003613 | InterPro:IPR011989 | InterPro:IPR013083 | PFAM:PF00514 | PFAM:PF04564 |
| PFscan:PS50176 | PFscan:PS51698 | PANTHER:PTHR23315 | PANTHER:PTHR23315:SF116 | SMART:SM00185 | SMART:SM00504 |
| SUPFAM:SSF48371 | SUPFAM:SSF57850 | UniPathway:UPA00143 | UniParc:UPI0004EEF1A9 | InterPro:Ubox_domain | InterPro:Znf_RING/FYVE/PHD |
| SEG:seg | : | : | : | : | : |
Description
BnaC01g43110DRING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:A0A078IVU1]
Coordinates
chrLK033282:+:21538..23765
Molecular Weight (calculated)
75221.6 Da
IEP (calculated)
7.829
GRAVY (calculated)
-0.062
Length
680 amino acids
Sequence
(BLAST)
(BLAST)
001: MIPTQNRRIL TFTAVYPCES VSITTLIDSL IKIAGEILSF KSKHFSTNKR SVQETLRHVL NLLIVFQEIR VGLIPADRSF PRSAILSLSE LHVIFQKLMI
101: LLKECTREGG KLYMLTNSDQ ISAHFRVLTR SISTCLDTFP VGSIELPEEV KELIYLLIRQ TRKYEARPDR DDKRALDSVY WIFNLFENRI NPNRDEVVRV
201: LDHVGVRKWR DCVKEIGFLG EEITVEGKDK NEIELLSSLM GFICYCRCVI LGGIDEDEDK GEEEEDDLVI RGLNVDDLRC PISLEIMNDP VVLETGHTYD
301: RSSIAKWFSA GNITCPKTGK NLESTVLVGN VSVKQVIQSY FKKEIDQKSM KKKKKKKTSI PESLAAEEAG KLISDFLAGE LINGGPKEMV KALVEIRILT
401: KTTSFNRSRL VEAGVVESLM KLLRPGDPTI QENAMAAILN LSKDIAGKVR IGGSGGGLEM IVEVLNEGAR RESRQHAAAA IFYLSSLGDY SRSIGEIPDS
501: IPGLLRIVKG CDYGDSPKRN ALIAIRSLLI QHSDNHWRVL AAGAVSVLLD LVRSGEIGDG VKADSIAVLA KIAEYPDGMI SVLRRGGLKL AVKVLGSSEV
601: SPVTKQHCVV LLLNLCVNGG SDVVGALAKD PSVMGSLYTA LSNGECGGGR KASALIKMIH EFQERKTETG LERERFIHAW
101: LLKECTREGG KLYMLTNSDQ ISAHFRVLTR SISTCLDTFP VGSIELPEEV KELIYLLIRQ TRKYEARPDR DDKRALDSVY WIFNLFENRI NPNRDEVVRV
201: LDHVGVRKWR DCVKEIGFLG EEITVEGKDK NEIELLSSLM GFICYCRCVI LGGIDEDEDK GEEEEDDLVI RGLNVDDLRC PISLEIMNDP VVLETGHTYD
301: RSSIAKWFSA GNITCPKTGK NLESTVLVGN VSVKQVIQSY FKKEIDQKSM KKKKKKKTSI PESLAAEEAG KLISDFLAGE LINGGPKEMV KALVEIRILT
401: KTTSFNRSRL VEAGVVESLM KLLRPGDPTI QENAMAAILN LSKDIAGKVR IGGSGGGLEM IVEVLNEGAR RESRQHAAAA IFYLSSLGDY SRSIGEIPDS
501: IPGLLRIVKG CDYGDSPKRN ALIAIRSLLI QHSDNHWRVL AAGAVSVLLD LVRSGEIGDG VKADSIAVLA KIAEYPDGMI SVLRRGGLKL AVKVLGSSEV
601: SPVTKQHCVV LLLNLCVNGG SDVVGALAKD PSVMGSLYTA LSNGECGGGR KASALIKMIH EFQERKTETG LERERFIHAW
001: MIHTPTGSSR RILTFPAVNP CESISLTTLV DSLLQLAGEI LSFKPKHFST NKRSVKETLR HVQTLVIFFE ELRIQIRVGS IPAGRSVILS LSELHVIFQK
101: LKFLLDDCTR DGAKLYMLMN SGQVSAHFRD LTRSISTSLD TFPVRSVDLP GEVNELIYLV MRQTRKSEAR PDRDDKRAID SVYWFFNLFE NRINPNSDEI
201: LRVLDHIGVR KWRDCVKEID FLREEISVGK KSNIEIELLS NLMGFICYCR CVILRGIDVD DEEKDKEEDD LMMVRSLNVD DLRCPISLEI MSDPVVLESG
301: HTYDRSSITK WFASGNITCP KTGKTLVSTV LVDNFSVKQV IQSYSKQNGV VMGQKGKKKV DVAESLAAEE AGKLTAEFLA GELIKGDEEE MVKALVEIRI
401: LTKTSTFYRS CLVEAGVVES LMKILRSDDP RIQENAMAGI MNLSKDIAGK TRIVGEDGGG LRLIVEVLND GARRESRQYA AAALFYLSSL GDYSRLIGEI
501: SDAIPGLVRI VKSCDYGDSA KRNALIAIRS LLMNQPDNHW RILAAGIVPV LLDLVKSEEI SDGVTADSMA ILAKMAEYPD GMISVLRRGG LKLAVKILGS
601: SEVSPATKQH CVALLLNLCH NGGSDVVGSL AKNPSIMGSL YTASSNGELG GGKKASALIK MIHEFQERKT GPGEPVLERE RFVHAW
101: LKFLLDDCTR DGAKLYMLMN SGQVSAHFRD LTRSISTSLD TFPVRSVDLP GEVNELIYLV MRQTRKSEAR PDRDDKRAID SVYWFFNLFE NRINPNSDEI
201: LRVLDHIGVR KWRDCVKEID FLREEISVGK KSNIEIELLS NLMGFICYCR CVILRGIDVD DEEKDKEEDD LMMVRSLNVD DLRCPISLEI MSDPVVLESG
301: HTYDRSSITK WFASGNITCP KTGKTLVSTV LVDNFSVKQV IQSYSKQNGV VMGQKGKKKV DVAESLAAEE AGKLTAEFLA GELIKGDEEE MVKALVEIRI
401: LTKTSTFYRS CLVEAGVVES LMKILRSDDP RIQENAMAGI MNLSKDIAGK TRIVGEDGGG LRLIVEVLND GARRESRQYA AAALFYLSSL GDYSRLIGEI
501: SDAIPGLVRI VKSCDYGDSA KRNALIAIRS LLMNQPDNHW RILAAGIVPV LLDLVKSEEI SDGVTADSMA ILAKMAEYPD GMISVLRRGG LKLAVKILGS
601: SEVSPATKQH CVALLLNLCH NGGSDVVGSL AKNPSIMGSL YTASSNGELG GGKKASALIK MIHEFQERKT GPGEPVLERE RFVHAW
Arabidopsis Description
PUB19U-box domain-containing protein 19 [Source:UniProtKB/Swiss-Prot;Acc:O80742]
SUBAcon: [plastid,cytosol]
SUBAcon: [plastid,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.