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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 1
  • cytosol 3
  • mitochondrion 1
  • plastid 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, nucleus, plastid
BaCelLo:nucleus
MultiLoc:cytosol
Predotar:plastid
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra032180.1-P Field mustard cytosol 91.06 95.89
CDX76873 Canola cytosol, plastid 70.89 58.37
AT2G23140.1 Thale cress cytosol 71.06 52.71
CDY46092 Canola endoplasmic reticulum, golgi, plasma membrane, plastid 71.06 42.3
GSMUA_Achr4P01530_001 Banana plasma membrane 37.72 37.97
PGSC0003DMT400027406 Potato cytosol 16.26 37.45
GSMUA_Achr9P12570_001 Banana cytosol 18.05 37.0
KRH30135 Soybean cytosol 50.24 36.87
KRG98177 Soybean cytosol 49.92 36.5
Solyc01g014230.2.1 Tomato cytosol 47.15 35.76
VIT_07s0129g00590.t01 Wine grape cytosol 49.27 35.73
KRH17146 Soybean cytosol 13.82 35.71
KRH72794 Soybean plasma membrane 46.99 35.55
CDX81323 Canola cytosol, plastid 41.3 35.13
Solyc12g100000.1.1 Tomato cytosol, plastid 46.67 35.04
CDY18649 Canola cytosol, plastid 40.16 34.69
PGSC0003DMT400046295 Potato cytosol 46.02 34.47
TraesCS3D01G527900.1 Wheat cytosol 43.58 32.25
TraesCS3A01G521300.1 Wheat cytosol 43.41 32.13
TraesCS3B01G591000.1 Wheat cytosol 43.25 32.01
HORVU3Hr1G113910.3 Barley cytosol 43.58 31.98
CDY12838 Canola cytosol 36.26 31.9
TraesCS3B01G443200.1 Wheat cytosol, endoplasmic reticulum 13.17 31.89
Os08t0110500-01 Rice plasma membrane 42.11 31.43
CDY57440 Canola cytosol 33.66 31.41
TraesCS3A01G390200.1 Wheat cytosol 21.46 30.07
TraesCS3B01G422200.1 Wheat cytosol 21.46 29.86
TraesCS3D01G382500.1 Wheat cytosol 21.3 29.64
HORVU3Hr1G081380.1 Barley cytosol 21.14 29.41
Zm00001d035040_P007 Maize mitochondrion 41.63 29.36
CDX68380 Canola cytosol 24.72 28.57
Zm00001d049708_P007 Maize cytosol 40.81 28.46
CDY04747 Canola cytosol, golgi 20.33 28.34
EES01872 Sorghum cytosol 37.07 28.32
Os01t0884400-01 Rice plasma membrane 38.05 27.92
CDX73449 Canola cytosol 31.54 27.56
CDY02891 Canola cytosol 33.01 27.54
CDY64696 Canola cytosol, extracellular, mitochondrion, plastid 32.68 27.24
CDX78262 Canola cytosol 30.89 27.07
CDY28679 Canola cytosol 11.38 26.62
TraesCS3B01G443500.1 Wheat cytosol 22.76 26.46
TraesCS3A01G410100.1 Wheat cytosol 22.76 26.46
CDX78273 Canola cytosol 27.15 26.34
EES14396 Sorghum cytosol 42.76 26.12
CDX68379 Canola cytosol 27.15 25.38
CDX99112 Canola cytosol 26.83 25.19
CDX86080 Canola cytosol 26.83 25.15
CDX91947 Canola plastid 14.31 24.93
CDY25764 Canola cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole 23.74 24.83
CDX74298 Canola plastid 14.15 24.58
Zm00001d042608_P002 Maize cytosol 36.91 24.54
CDY21412 Canola cytosol, endoplasmic reticulum 24.23 24.51
CDY04746 Canola cytosol, endoplasmic reticulum 24.23 24.47
CDY12497 Canola cytosol 23.74 24.46
CDY02828 Canola cytosol 13.98 24.29
CDY32692 Canola peroxisome 13.82 24.08
CDY31736 Canola cytosol 24.72 23.68
CDX77213 Canola cytosol 24.72 23.64
CDX96295 Canola cytosol, plasma membrane 23.41 23.38
CDX74050 Canola cytosol 17.24 23.25
CDY08002 Canola cytosol 16.91 22.86
CDY71737 Canola cytosol 17.07 22.73
CDY28059 Canola cytosol 17.07 22.73
CDY68037 Canola cytosol 24.07 22.6
CDX95193 Canola cytosol 24.07 22.6
CDX72769 Canola cytosol 22.28 22.39
CDX90518 Canola plastid 16.26 21.98
TraesCS3A01G410000.1 Wheat cytosol 22.44 21.77
CDY68352 Canola cytosol 15.94 21.49
CDY09688 Canola cytosol 15.61 21.15
CDY38506 Canola cytosol 15.28 20.61
CDX71307 Canola cytosol 22.11 20.21
CDY31406 Canola cytosol 22.11 20.18
CDY37666 Canola cytosol, plastid 21.46 19.97
CDX90186 Canola mitochondrion 23.09 19.92
CDY43332 Canola mitochondrion 23.09 19.75
CDY48332 Canola mitochondrion, plastid 22.6 19.74
CDY43686 Canola plastid 21.14 19.67
CDX94661 Canola plastid 22.28 19.27
CDX99816 Canola plastid 22.6 19.2
CDX73439 Canola plastid 27.32 18.65
CDY51235 Canola extracellular, golgi 14.96 17.73
CDX70810 Canola cytosol 13.33 17.37
CDY24520 Canola cytosol 17.89 16.32
CDY54132 Canola cytosol 17.72 16.03
CDX93411 Canola mitochondrion 18.05 15.9
CDY55050 Canola cytosol 17.89 15.8
CDY04344 Canola cytosol 7.8 15.05
CDY04342 Canola cytosol 7.8 14.41
CDX70805 Canola cytosol 14.63 5.84
CDY51234 Canola cytosol 14.31 5.31
Protein Annotations
Gene3D:1.25.10.10Gene3D:3.30.40.10MapMan:35.1GO:A0A078HMU8UniProt:A0A078HMU8InterPro:ARM-like
InterPro:ARM-type_foldInterPro:ArmadilloEnsemblPlants:CDY38931ProteinID:CDY38931ProteinID:CDY38931.1ncoils:Coil
GO:GO:0003674GO:GO:0003824GO:GO:0004842GO:GO:0005488GO:GO:0005515GO:GO:0006464
GO:GO:0008150GO:GO:0008152GO:GO:0009987GO:GO:0016567GO:GO:0016740GO:GO:0019538
EnsemblPlantsGene:GSBRNA2T00066973001InterPro:IPR000225InterPro:IPR003613InterPro:IPR011989InterPro:IPR013083PFAM:PF00514
PFAM:PF04564PFscan:PS50176PFscan:PS51698PANTHER:PTHR23315PANTHER:PTHR23315:SF7SMART:SM00185
SMART:SM00504SUPFAM:SSF48371SUPFAM:SSF57850UniPathway:UPA00143UniParc:UPI0004EE036EInterPro:Ubox_domain
InterPro:Znf_RING/FYVE/PHDSEG:seg::::
Description
BnaA04g13520DRING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:A0A078HMU8]
Coordinates
chrLK032435:-:95776..98385
Molecular Weight (calculated)
68972.0 Da
IEP (calculated)
4.994
GRAVY (calculated)
-0.442
Length
615 amino acids
Sequence
(BLAST)
001: MEISALVDSI SSFLNLSSSR HFDLDPFDKY YKRLEELLRV LKPIADDALL NSDLALEERL CKSFQELTQD VDHSRDLFTS WHPFSSKVYF VLQIESLIPK
101: MRDTIVDTFQ FLQSLKHDIP DELSPASLEK CLEKIKHLSY EEISSVIDVA LERQKENAEQ SENNAEVEFL DQLIVIVNQM HERLLLTKQT QTSSVSILAD
201: FFCPLSLEVM NDPVIVSSGQ TYEKAFIKRW IDLGLKVCPK TRQTLTHTTL IPNYTVKALI SNWCDTNDVN LPDPNQSSSL NELNPLLSCT DSIHDSPSSS
301: NDSPEMNTDE NHHHHLRSPS ASISSVSNEE FPRTDGNENS EESPHATTPY SSDASGEIRS GPLAATTTSS AAPPWRDLSP RFMDRRNNRG SQFWRRPSKI
401: ISAPSNSARR DLAEVESQVK KLLEELKSIS LDVERRATAE IRLLAKHNMD NRIVIGNSRA IVSLVELLRS TDSATQENAV TALLNLSINN NNKSLIAEAG
501: AIEPLIHVLE NGNSEAKENS AATLFSLSVI EENKIKIDQS GAIGPLREGE RCCSSASAFD QQWEVLQYGS SRRCCSSSCR SLAVWYSQSQ RKGTGIAQLL
601: QEPKGWKCWA RLMDE
Best Arabidopsis Sequence Match ( AT2G23140.1 )
(BLAST)
001: MVEMEVLLRS ISSFLNLSSS KHIDLDPFEK YYKRVEELLR VLKPIADVVV TSDFVFDEKL GKAFEELTQD VDQSIDLFRS WQAFSSKVYF VLQIESLLPK
101: MRDTIVDTFQ FLMSSKNHLP DELSPASLEQ CLEKIKHLSY EEISSVIDGA LRDQRDGVGP SPEILVKIGE NTGLRSNQEI LIEAVALERQ KEMAEQSENN
201: AEVEFLDQLI VIVNRMHERL LLIKQTQTSS VAILADFFCP LSLEVMTDPV IVSSGQTYEK AFIKRWIDLG LKVCPKTRQT LTHTTLIPNY TVKALIANWC
301: ETNDVKLPDP NKSTSLNELS PLLSCTDSIP STGADVSARK VSNKSHDWDA SSSETGKPSF SSRATEREGA SPSRPASALG ASSPGISGNG YGLDARRGSL
401: NDFEDRSNDS RELRTDAPGR SSVSSTTRGS VENGQTSENH HHRSPSATST VSNEEFPRAD ANENSEESAH ATPYSSDASG EIRSGPLAAT TSAATRRDLS
501: DFSPKFMDRR TRGQFWRRPS ERLGSRIVSA PSNETRRDLS EVETQVKKLV EELKSSSLDT QRQATAELRL LAKHNMDNRI VIGNSGAIVL LVELLYSTDS
601: ATQENAVTAL LNLSINDNNK KAIADAGAIE PLIHVLENGS SEAKENSAAT LFSLSVIEEN KIKIGQSGAI GPLVDLLGNG TPRGKKDAAT ALFNLSIHQE
701: NKAMIVQSGA VRYLIDLMDP AAGMVDKAVA VLANLATIPE GRNAIGQEGG IPLLVEVVEL GSARGKENAA AALLQLSTNS GRFCNMVLQE GAVPPLVALS
801: QSGTPRAREK AQALLSYFRN QRHGNAGRG
Arabidopsis Description
RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:F4ILG6]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.