Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- extracellular 2
- endoplasmic reticulum 2
- vacuole 2
- plasma membrane 3
- golgi 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G71020.1 | CDX72718 | AT4G39050.1 | 21798944 |
| AT1G71020.1 | CDX90305 | AT4G39050.1 | 21798944 |
| AT1G71020.1 | CDY12116 | AT4G39050.1 | 21798944 |
| AT1G71020.1 | CDY22394 | AT4G39050.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra016165.1-P | Field mustard | cytosol, plasma membrane | 99.51 | 99.51 |
| CDX72769 | Canola | cytosol | 96.27 | 96.9 |
| AT1G71020.1 | Thale cress | cytosol | 83.77 | 82.17 |
| CDY04746 | Canola | cytosol, endoplasmic reticulum | 76.46 | 77.34 |
| CDY21412 | Canola | cytosol, endoplasmic reticulum | 76.14 | 77.14 |
| CDY25764 | Canola | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 73.21 | 76.7 |
| CDY04747 | Canola | cytosol, golgi | 54.87 | 76.64 |
| CDY12497 | Canola | cytosol | 73.7 | 76.05 |
| VIT_01s0011g04770.t01 | Wine grape | cytosol | 60.55 | 58.37 |
| KRH50347 | Soybean | nucleus | 61.2 | 57.65 |
| KRG89279 | Soybean | cytosol | 60.55 | 57.3 |
| PGSC0003DMT400015349 | Potato | cytosol | 58.6 | 55.8 |
| Solyc04g007640.2.1 | Tomato | cytosol | 58.28 | 55.49 |
| PGSC0003DMT400078473 | Potato | cytosol | 56.33 | 53.38 |
| Solyc05g008230.2.1 | Tomato | cytosol | 56.17 | 53.23 |
| Zm00001d000381_P001 | Maize | cytosol | 50.49 | 48.75 |
| EES07310 | Sorghum | cytosol | 50.16 | 48.43 |
| TraesCS6D01G274500.1 | Wheat | cytosol | 50.16 | 48.21 |
| TraesCS6A01G293600.1 | Wheat | cytosol | 50.16 | 48.21 |
| TraesCS6B01G324000.1 | Wheat | cytosol | 50.16 | 48.06 |
| Os02t0732200-01 | Rice | cytosol | 49.51 | 47.88 |
| CDY28679 | Canola | cytosol | 19.32 | 45.25 |
| GSMUA_Achr9P15600_001 | Banana | cytosol | 45.94 | 41.86 |
| CDX68380 | Canola | cytosol | 35.23 | 40.79 |
| CDX86080 | Canola | cytosol | 42.86 | 40.24 |
| CDX99112 | Canola | cytosol | 42.53 | 40.0 |
| CDX78273 | Canola | cytosol | 40.91 | 39.75 |
| CDX68379 | Canola | cytosol | 42.37 | 39.67 |
| CDY31736 | Canola | cytosol | 40.58 | 38.94 |
| CDX77213 | Canola | cytosol | 40.26 | 38.57 |
| HORVU6Hr1G073280.1 | Barley | cytosol | 50.0 | 38.36 |
| CDY32692 | Canola | peroxisome | 20.13 | 35.13 |
| CDY71737 | Canola | cytosol | 26.3 | 35.06 |
| CDY28059 | Canola | cytosol | 26.3 | 35.06 |
| CDY02828 | Canola | cytosol | 19.97 | 34.75 |
| CDX91947 | Canola | plastid | 19.64 | 34.28 |
| CDX74050 | Canola | cytosol | 25.32 | 34.21 |
| CDX74298 | Canola | plastid | 19.48 | 33.9 |
| CDY08002 | Canola | cytosol | 24.51 | 33.19 |
| CDY68037 | Canola | cytosol | 34.58 | 32.52 |
| CDX95193 | Canola | cytosol | 34.42 | 32.37 |
| CDY68352 | Canola | cytosol | 21.75 | 29.39 |
| CDY38506 | Canola | cytosol | 21.27 | 28.73 |
| CDX94661 | Canola | plastid | 32.47 | 28.13 |
| CDY43686 | Canola | plastid | 30.03 | 27.99 |
| CDX90186 | Canola | mitochondrion | 32.31 | 27.91 |
| CDX73439 | Canola | plastid | 40.75 | 27.86 |
| CDY48332 | Canola | mitochondrion, plastid | 31.82 | 27.84 |
| CDY37666 | Canola | cytosol, plastid | 29.87 | 27.84 |
| CDY43332 | Canola | mitochondrion | 31.98 | 27.4 |
| CDY18649 | Canola | cytosol, plastid | 31.66 | 27.39 |
| CDX99816 | Canola | plastid | 32.14 | 27.35 |
| CDX90518 | Canola | plastid | 20.13 | 27.25 |
| CDX81323 | Canola | cytosol, plastid | 31.66 | 26.97 |
| CDY09688 | Canola | cytosol | 19.48 | 26.43 |
| CDX73449 | Canola | cytosol | 29.87 | 26.14 |
| CDX76873 | Canola | cytosol, plastid | 31.33 | 25.84 |
| CDX78262 | Canola | cytosol | 29.38 | 25.78 |
| CDY57440 | Canola | cytosol | 27.44 | 25.64 |
| CDY12838 | Canola | cytosol | 29.06 | 25.61 |
| CDX71307 | Canola | cytosol | 27.76 | 25.41 |
| CDY31406 | Canola | cytosol | 27.76 | 25.37 |
| CDY02891 | Canola | cytosol | 29.38 | 24.56 |
| CDY64696 | Canola | cytosol, extracellular, mitochondrion, plastid | 29.38 | 24.53 |
| CDY38931 | Canola | cytosol | 23.38 | 23.41 |
| CDX70810 | Canola | cytosol | 17.37 | 22.67 |
| CDX93411 | Canola | mitochondrion | 25.16 | 22.21 |
| CDY55050 | Canola | cytosol | 24.84 | 21.98 |
| CDY24520 | Canola | cytosol | 23.7 | 21.66 |
| CDY54132 | Canola | cytosol | 23.54 | 21.32 |
| CDY51235 | Canola | extracellular, golgi | 17.53 | 20.81 |
| CDY46092 | Canola | endoplasmic reticulum, golgi, plasma membrane, plastid | 31.33 | 18.68 |
| CDY04344 | Canola | cytosol | 9.09 | 17.55 |
| CDY04342 | Canola | cytosol | 9.25 | 17.12 |
| CDX70805 | Canola | cytosol | 18.51 | 7.4 |
| CDY51234 | Canola | cytosol | 17.86 | 6.64 |
Protein Annotations
| Gene3D:1.25.10.10 | MapMan:19.2.2.1.5.2.1 | Gene3D:3.30.40.10 | GO:A0A078E309 | InterPro:ARM-like | InterPro:ARM-type_fold |
| InterPro:Armadillo | EnsemblPlants:CDX96295 | ProteinID:CDX96295 | ProteinID:CDX96295.1 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0004842 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009987 | GO:GO:0016567 | GO:GO:0016740 | GO:GO:0019538 | EnsemblPlantsGene:GSBRNA2T00102436001 | InterPro:IPR000225 |
| InterPro:IPR003613 | InterPro:IPR011989 | InterPro:IPR013083 | PFAM:PF00514 | PFAM:PF04564 | PFscan:PS50176 |
| PFscan:PS51698 | PANTHER:PTHR23315 | PANTHER:PTHR23315:SF52 | SMART:SM00185 | SMART:SM00504 | SUPFAM:SSF48371 |
| SUPFAM:SSF57850 | UniPathway:UPA00143 | UniParc:UPI0004EEBFE5 | InterPro:Ubox_domain | InterPro:Znf_RING/FYVE/PHD | SEG:seg |
Description
BnaA07g29060D
Coordinates
chrLK031894:-:166417..169341
Molecular Weight (calculated)
67832.8 Da
IEP (calculated)
8.470
GRAVY (calculated)
-0.232
Length
616 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGVAVSPAS LLDVIAEIAE ISANTGVFKK DCADLARRVC LLTHLVEEIR DSPQTPTAEE SDASSSCECD WWSDLVVGLQ AAKRLLSAAT CFQARESSEG
101: AAKRISFQFQ CVTWKLEKAL GNLPYDRYDI SDEVREHVEL ARLQLRRAMQ RYGSLNSKKF STALSEPMEK DASRKVTEKL ECIPETIHSN IPSSDEKKLE
201: SPPRRKSSSV SLAFFLSKDA DNERLEKAIT KTNDDDSKKS DNLTIPEDFL CPISLELMKD PVIVSTGQTY ERSYIQRWID CGNLRCPKTQ QKLGNFALTP
301: NYVLRSLISQ WCTKHNIEQP GGYTKNCEGE VSKIRALVRK LSTRSLQDRR TALSEIRSLS KRSSDNRILI AEAGAIPILV KLLTSEDVET QEKAVTCVLN
401: LSIYESNKEL IMLAGAVTSI VQVLRAGTEE AKENAAATLF SLSLADENKI IIGASGAIPA LVNLLENGSV RGKKDAATAL FNLCIYEGNK GRAVRAGVVN
501: PLVKMLSDTS SHRMVTEALT ILSVLAGNQD AKTAMLRANA IPCLIALLQK DQPRNRENAA AILFAICKRD KEKLILIGKL GAVVPLMELS RDGTERAKRK
601: ANSLLELLRK SSQKLC
101: AAKRISFQFQ CVTWKLEKAL GNLPYDRYDI SDEVREHVEL ARLQLRRAMQ RYGSLNSKKF STALSEPMEK DASRKVTEKL ECIPETIHSN IPSSDEKKLE
201: SPPRRKSSSV SLAFFLSKDA DNERLEKAIT KTNDDDSKKS DNLTIPEDFL CPISLELMKD PVIVSTGQTY ERSYIQRWID CGNLRCPKTQ QKLGNFALTP
301: NYVLRSLISQ WCTKHNIEQP GGYTKNCEGE VSKIRALVRK LSTRSLQDRR TALSEIRSLS KRSSDNRILI AEAGAIPILV KLLTSEDVET QEKAVTCVLN
401: LSIYESNKEL IMLAGAVTSI VQVLRAGTEE AKENAAATLF SLSLADENKI IIGASGAIPA LVNLLENGSV RGKKDAATAL FNLCIYEGNK GRAVRAGVVN
501: PLVKMLSDTS SHRMVTEALT ILSVLAGNQD AKTAMLRANA IPCLIALLQK DQPRNRENAA AILFAICKRD KEKLILIGKL GAVVPLMELS RDGTERAKRK
601: ANSLLELLRK SSQKLC
001: MAGGAITPDS LIGLIAEINE IPGNFGLFKK DCSDLARRVG LLTHLIEEIR DSSPPSESDA SSSLNSHECD WWSDLVVGLQ AAKRLLSSAT SFQARESSDG
101: AAKRISFQFQ CVTWKLEKAL GDLTYDRYDI SDEVREQVEL ARLQLRRAMQ RYGSLNSKKF SSGLSEPMEK DASSNRKVIE KLESIPETVH SLSDEKKFES
201: PPPWKSSSVS LAFFLSKDGD DERLEKAVTE NSDDSQKSDN LTIPEDFLCP ISLELMKDPA IVSTGQTYER SFIQRWIDCG NLSCPKTQQK LENFTLTPNY
301: VLRSLISQWC TKHNIEQPGG YMNGRTKNSD GSFRDLSGDM SAIRALVCKL SSQSIEDRRT AVSEIRSLSK RSTDNRILIA EAGAIPVLVK LLTSDGDTET
401: QENAVTCILN LSIYEHNKEL IMLAGAVTSI VLVLRAGSME ARENAAATLF SLSLADENKI IIGASGAIMA LVDLLQYGSV RGKKDAATAL FNLCIYQGNK
501: GRAVRAGIVK PLVKMLTDSS SERMADEALT ILSVLASNQV AKTAILRANA IPPLIDCLQK DQPRNRENAA AILLCLCKRD TEKLISIGRL GAVVPLMELS
601: RDGTERAKRK ANSLLELLRK SSRKLGSL
101: AAKRISFQFQ CVTWKLEKAL GDLTYDRYDI SDEVREQVEL ARLQLRRAMQ RYGSLNSKKF SSGLSEPMEK DASSNRKVIE KLESIPETVH SLSDEKKFES
201: PPPWKSSSVS LAFFLSKDGD DERLEKAVTE NSDDSQKSDN LTIPEDFLCP ISLELMKDPA IVSTGQTYER SFIQRWIDCG NLSCPKTQQK LENFTLTPNY
301: VLRSLISQWC TKHNIEQPGG YMNGRTKNSD GSFRDLSGDM SAIRALVCKL SSQSIEDRRT AVSEIRSLSK RSTDNRILIA EAGAIPVLVK LLTSDGDTET
401: QENAVTCILN LSIYEHNKEL IMLAGAVTSI VLVLRAGSME ARENAAATLF SLSLADENKI IIGASGAIMA LVDLLQYGSV RGKKDAATAL FNLCIYQGNK
501: GRAVRAGIVK PLVKMLTDSS SERMADEALT ILSVLASNQV AKTAILRANA IPPLIDCLQK DQPRNRENAA AILLCLCKRD TEKLISIGRL GAVVPLMELS
601: RDGTERAKRK ANSLLELLRK SSRKLGSL
Arabidopsis Description
PUB10RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:A0A178WJE0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.