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Thale cress
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Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 1
  • cytosol 2
  • mitochondrion 1
  • plasma membrane 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, nucleus, plasma membrane
BaCelLo:nucleus
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:plasma membrane
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra016165.1-P Field mustard cytosol, plasma membrane 82.32 83.93
CDX96295 Canola cytosol, plasma membrane 82.17 83.77
CDX72769 Canola cytosol 80.41 82.52
AT1G23030.1 Thale cress cytosol 76.11 78.1
VIT_01s0011g04770.t01 Wine grape cytosol 63.06 61.97
KRH50347 Soybean nucleus 62.74 60.24
KRG89279 Soybean cytosol 62.42 60.22
PGSC0003DMT400015349 Potato cytosol 60.99 59.2
Solyc04g007640.2.1 Tomato cytosol 60.35 58.58
PGSC0003DMT400078473 Potato cytosol 57.48 55.54
Solyc05g008230.2.1 Tomato cytosol 57.32 55.38
Zm00001d000381_P001 Maize cytosol 51.11 50.31
EES07310 Sorghum cytosol 50.8 50.0
TraesCS6D01G274500.1 Wheat cytosol 50.16 49.14
TraesCS6A01G293600.1 Wheat cytosol 50.16 49.14
Os02t0732200-01 Rice cytosol 49.84 49.14
TraesCS6B01G324000.1 Wheat cytosol 50.16 48.99
GSMUA_Achr9P15600_001 Banana cytosol 48.09 44.67
AT3G54850.1 Thale cress cytosol 41.4 41.14
AT2G28830.1 Thale cress endoplasmic reticulum 38.06 41.07
AT3G46510.1 Thale cress cytosol 42.36 40.3
HORVU6Hr1G073280.1 Barley cytosol 50.0 39.1
AT3G01400.1 Thale cress cytosol 20.54 36.34
AT5G58680.1 Thale cress cytosol 20.22 35.57
AT3G07360.1 Thale cress cytosol 24.68 33.7
AT5G42340.1 Thale cress cytosol 34.08 32.42
AT5G18320.1 Thale cress cytosol 21.97 30.13
AT1G29340.1 Thale cress plastid 32.32 27.85
AT4G16490.1 Thale cress plastid 20.38 27.12
AT5G18340.1 Thale cress nucleus 19.27 26.54
AT5G67340.1 Thale cress cytosol 29.78 26.45
AT5G01830.1 Thale cress plastid 27.71 25.82
AT5G18330.1 Thale cress cytosol 17.68 24.94
AT3G54790.1 Thale cress cytosol 29.3 24.21
AT2G23140.1 Thale cress cytosol 31.05 23.52
AT1G60190.1 Thale cress cytosol, plastid 23.73 21.72
AT1G10560.1 Thale cress cytosol 23.73 21.38
Protein Annotations
Gene3D:1.25.10.10Gene3D:1.25.10.110MapMan:19.2.2.1.5.2.1Gene3D:3.30.40.10EntrezGene:843442UniProt:A0A178WJE0
ProteinID:AAD55500.1ProteinID:AAG51682.1ProteinID:AEE35152.1EMBL:AK220971InterPro:ARM-likeInterPro:ARM-type_fold
ArrayExpress:AT1G71020EnsemblPlantsGene:AT1G71020RefSeq:AT1G71020TAIR:AT1G71020RefSeq:AT1G71020-TAIR-GEnsemblPlants:AT1G71020.1
TAIR:AT1G71020.1EMBL:AY075626EMBL:AY142062InterPro:ArmadilloUnigene:At.43068ncoils:Coil
GO:GO:0003674GO:GO:0003824GO:GO:0004842GO:GO:0005488GO:GO:0005515GO:GO:0005575
GO:GO:0005622GO:GO:0005623GO:GO:0005634GO:GO:0005737GO:GO:0006464GO:GO:0007154
GO:GO:0007165GO:GO:0008150GO:GO:0008152GO:GO:0009719GO:GO:0009987GO:GO:0016567
GO:GO:0016740GO:GO:0019538GO:GO:0031648GO:GO:0043621GO:GO:0051865GO:GO:2000022
InterPro:IPR000225InterPro:IPR003613InterPro:IPR011989InterPro:IPR013083RefSeq:NP_177258.3ProteinID:OAP17655.1
PFAM:PF00514PFAM:PF04564PO:PO:0000013PO:PO:0000037PO:PO:0000293PO:PO:0001054
PO:PO:0001078PO:PO:0001081PO:PO:0001185PO:PO:0004507PO:PO:0007064PO:PO:0007098
PO:PO:0007103PO:PO:0007115PO:PO:0007611PO:PO:0007616PO:PO:0008019PO:PO:0009005
PO:PO:0009006PO:PO:0009009PO:PO:0009010PO:PO:0009025PO:PO:0009029PO:PO:0009030
PO:PO:0009031PO:PO:0009032PO:PO:0009046PO:PO:0009052PO:PO:0020030PO:PO:0020038
PO:PO:0020100PO:PO:0020137PO:PO:0025022PO:PO:0025195PFscan:PS50176PFscan:PS51698
PANTHER:PTHR23315PANTHER:PTHR23315:SF52UniProt:Q9C9A6SMART:SM00185SMART:SM00504SUPFAM:SSF48371
SUPFAM:SSF57850UniParc:UPI000009CE55InterPro:Ubox_domainInterPro:Znf_RING/FYVE/PHDSEG:seg:
Description
PUB10RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:A0A178WJE0]
Coordinates
chr1:-:26790549..26793319
Molecular Weight (calculated)
68978.6 Da
IEP (calculated)
6.954
GRAVY (calculated)
-0.251
Length
628 amino acids
Sequence
(BLAST)
001: MAGGAITPDS LIGLIAEINE IPGNFGLFKK DCSDLARRVG LLTHLIEEIR DSSPPSESDA SSSLNSHECD WWSDLVVGLQ AAKRLLSSAT SFQARESSDG
101: AAKRISFQFQ CVTWKLEKAL GDLTYDRYDI SDEVREQVEL ARLQLRRAMQ RYGSLNSKKF SSGLSEPMEK DASSNRKVIE KLESIPETVH SLSDEKKFES
201: PPPWKSSSVS LAFFLSKDGD DERLEKAVTE NSDDSQKSDN LTIPEDFLCP ISLELMKDPA IVSTGQTYER SFIQRWIDCG NLSCPKTQQK LENFTLTPNY
301: VLRSLISQWC TKHNIEQPGG YMNGRTKNSD GSFRDLSGDM SAIRALVCKL SSQSIEDRRT AVSEIRSLSK RSTDNRILIA EAGAIPVLVK LLTSDGDTET
401: QENAVTCILN LSIYEHNKEL IMLAGAVTSI VLVLRAGSME ARENAAATLF SLSLADENKI IIGASGAIMA LVDLLQYGSV RGKKDAATAL FNLCIYQGNK
501: GRAVRAGIVK PLVKMLTDSS SERMADEALT ILSVLASNQV AKTAILRANA IPPLIDCLQK DQPRNRENAA AILLCLCKRD TEKLISIGRL GAVVPLMELS
601: RDGTERAKRK ANSLLELLRK SSRKLGSL
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.