Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY38506 | Canola | cytosol | 70.74 | 71.05 |
| CDY68352 | Canola | cytosol | 69.21 | 69.52 |
| AT5G18330.1 | Thale cress | cytosol | 62.45 | 64.27 |
| AT5G18340.1 | Thale cress | nucleus | 63.97 | 64.25 |
| CDX70810 | Canola | cytosol | 56.99 | 55.3 |
| Bra006451.1-P | Field mustard | cytosol | 54.15 | 53.1 |
| CDY51235 | Canola | extracellular, golgi | 53.93 | 47.59 |
| KRH68828 | Soybean | cytosol | 37.77 | 40.23 |
| VIT_00s0524g00030.t01 | Wine grape | cytosol | 38.86 | 39.64 |
| VIT_04s0043g00840.t01 | Wine grape | cytosol | 39.08 | 39.34 |
| PGSC0003DMT400016998 | Potato | cytosol | 38.21 | 38.98 |
| GSMUA_Achr6P06560_001 | Banana | cytosol | 31.66 | 38.87 |
| Solyc09g056450.2.1 | Tomato | cytosol | 37.99 | 38.75 |
| KRG97080 | Soybean | cytosol, nucleus | 37.12 | 38.64 |
| AT3G07360.1 | Thale cress | cytosol | 38.65 | 38.48 |
| GSMUA_Achr10P... | Banana | cytosol | 31.0 | 37.97 |
| KRH46608 | Soybean | cytosol | 38.21 | 37.96 |
| KRG99581 | Soybean | cytosol | 37.99 | 37.74 |
| KRG92593 | Soybean | cytosol | 36.24 | 37.47 |
| Os02t0488600-01 | Rice | cytosol, nucleus | 33.62 | 36.41 |
| GSMUA_Achr9P01670_001 | Banana | cytosol | 36.9 | 36.27 |
| PGSC0003DMT400011486 | Potato | cytosol | 28.17 | 36.13 |
| Solyc04g050780.1.1 | Tomato | cytosol | 33.84 | 35.96 |
| EES06804 | Sorghum | cytosol | 34.72 | 34.27 |
| Zm00001d016501_P001 | Maize | cytosol | 34.72 | 34.19 |
| PGSC0003DMT400039084 | Potato | cytosol | 32.75 | 33.86 |
| Solyc04g050770.1.1 | Tomato | cytosol | 32.1 | 33.18 |
| Os04t0348400-01 | Rice | cytosol | 32.1 | 32.03 |
| TraesCS2B01G294100.1 | Wheat | nucleus | 31.44 | 31.3 |
| TraesCS2A01G276400.1 | Wheat | nucleus | 31.44 | 31.3 |
| TraesCS2D01G275400.1 | Wheat | nucleus | 31.22 | 31.09 |
| HORVU2Hr1G067610.6 | Barley | cytosol | 31.44 | 30.38 |
| AT3G01400.1 | Thale cress | cytosol | 19.0 | 24.51 |
| AT1G23030.1 | Thale cress | cytosol | 32.31 | 24.18 |
| AT2G28830.1 | Thale cress | endoplasmic reticulum | 30.13 | 23.71 |
| AT3G46510.1 | Thale cress | cytosol | 33.62 | 23.33 |
| Bra002153.1-P | Field mustard | cytosol | 69.21 | 23.21 |
| AT3G54850.1 | Thale cress | cytosol | 31.88 | 23.1 |
| AT5G58680.1 | Thale cress | cytosol | 17.9 | 22.97 |
| AT1G71020.1 | Thale cress | cytosol | 30.13 | 21.97 |
| AT5G42340.1 | Thale cress | cytosol | 30.57 | 21.21 |
| AT5G67340.1 | Thale cress | cytosol | 30.13 | 19.52 |
| AT4G16490.1 | Thale cress | plastid | 19.65 | 19.07 |
| AT3G54790.1 | Thale cress | cytosol | 30.13 | 18.16 |
| AT5G01830.1 | Thale cress | plastid | 26.2 | 17.8 |
| AT1G29340.1 | Thale cress | plastid | 27.29 | 17.15 |
| AT2G23140.1 | Thale cress | cytosol | 31.0 | 17.13 |
| CDX70805 | Canola | cytosol | 55.9 | 16.61 |
| Bra006452.1-P | Field mustard | cytosol | 56.77 | 15.65 |
| CDY51234 | Canola | cytosol | 55.68 | 15.39 |
| AT1G10560.1 | Thale cress | cytosol | 21.18 | 13.92 |
| AT1G60190.1 | Thale cress | cytosol, plastid | 20.52 | 13.7 |
Protein Annotations
| Gene3D:1.25.10.10 | Gene3D:3.30.40.10 | MapMan:35.1 | EntrezGene:831950 | EMBL:AC051626 | ProteinID:AED92539.1 |
| InterPro:ARM-like | InterPro:ARM-type_fold | ArrayExpress:AT5G18320 | EnsemblPlantsGene:AT5G18320 | RefSeq:AT5G18320 | TAIR:AT5G18320 |
| RefSeq:AT5G18320-TAIR-G | EnsemblPlants:AT5G18320.1 | TAIR:AT5G18320.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0004842 | GO:GO:0005488 | GO:GO:0006464 | GO:GO:0006950 | GO:GO:0007154 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009605 | GO:GO:0009628 | GO:GO:0009987 | GO:GO:0009991 | GO:GO:0016567 |
| GO:GO:0016740 | GO:GO:0019538 | GO:GO:0042631 | InterPro:IPR003613 | InterPro:IPR011989 | InterPro:IPR013083 |
| RefSeq:NP_197333.2 | PFAM:PF04564 | PFscan:PS51698 | PANTHER:PTHR23315 | PANTHER:PTHR23315:SF75 | UniProt:Q3E9F7 |
| SMART:SM00504 | SUPFAM:SSF48371 | SUPFAM:SSF57850 | UniParc:UPI0000196DB5 | InterPro:Ubox_domain | InterPro:Znf_RING/FYVE/PHD |
Description
PUB46Putative U-box domain-containing protein 46 [Source:UniProtKB/Swiss-Prot;Acc:Q3E9F7]
Coordinates
chr5:-:6064170..6066284
Molecular Weight (calculated)
50875.2 Da
IEP (calculated)
6.439
GRAVY (calculated)
-0.152
Length
458 amino acids
Sequence
(BLAST)
(BLAST)
001: MADSTETNAD TLRRELQKVL TEILNDGGGN DRDETEAFSG VVKAIDEAVR ILTCLRKVES KIPESDISPV EVPKEFICTL SNTIMIEPVI IASGQTYEKR
101: YITEWLKHER TCPKTKQVLS HRLWIPNHLI SDLITQWCLV NKYDHQKPSD ELVAELFTSD IEALLQRVSS SSSVADQIEA AKELRHQTKK FPNVRVFFVA
201: GIHDSITRLL SPLSTLDEAV DSSLELQENI VTALFNLSIL ESNKTVIAEN CLVIPLLTKS LKQGTDETRR NAAATLSSLS AIDSNKIIIG NSEAVKALID
301: LIEEGDLLAT KEATSTVFNL CIVLENKGKV VSAGLIHAAT KKIKAGSNVD ELLSLLALIS THNRAVEEMD KLGFIYDLFS ILRKPSSLLT GENAVVIVFN
401: MYDRNRDRSR LKVVGEEENQ HGTFTKLAKQ GSVRAARKAQ GILQWIKRFV TGKEPQRA
101: YITEWLKHER TCPKTKQVLS HRLWIPNHLI SDLITQWCLV NKYDHQKPSD ELVAELFTSD IEALLQRVSS SSSVADQIEA AKELRHQTKK FPNVRVFFVA
201: GIHDSITRLL SPLSTLDEAV DSSLELQENI VTALFNLSIL ESNKTVIAEN CLVIPLLTKS LKQGTDETRR NAAATLSSLS AIDSNKIIIG NSEAVKALID
301: LIEEGDLLAT KEATSTVFNL CIVLENKGKV VSAGLIHAAT KKIKAGSNVD ELLSLLALIS THNRAVEEMD KLGFIYDLFS ILRKPSSLLT GENAVVIVFN
401: MYDRNRDRSR LKVVGEEENQ HGTFTKLAKQ GSVRAARKAQ GILQWIKRFV TGKEPQRA
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.