CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
plastid 2
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d016501_P001	Maize	cytosol	86.64	86.45
Os02t0488600-01	Rice	cytosol, nucleus	75.0	82.27
GSMUA_Achr6P06560_001	Banana	cytosol	52.37	65.15
GSMUA_Achr10P...	Banana	cytosol	50.0	62.03
GSMUA_Achr9P01670_001	Banana	cytosol	59.91	59.66
VIT_04s0043g00840.t01	Wine grape	cytosol	48.71	49.67
VIT_00s0524g00030.t01	Wine grape	cytosol	47.2	48.78
KRH68828	Soybean	cytosol	44.4	47.91
PGSC0003DMT400016998	Potato	cytosol	45.91	47.44
KRG97080	Soybean	cytosol, nucleus	44.83	47.27
Solyc09g056450.2.1	Tomato	cytosol	45.47	46.99
AT3G07360.1	Thale cress	cytosol	45.47	45.87
CDX74050	Canola	cytosol	44.61	45.39
Bra001247.1-P	Field mustard	cytosol	44.61	45.39
KRG99581	Soybean	cytosol	44.83	45.12
CDY71737	Canola	cytosol	44.83	45.02
Bra029642.1-P	Field mustard	cytosol	44.83	45.02
Bra040374.1-P	Field mustard	cytosol	43.75	45.01
KRH46608	Soybean	cytosol	44.61	44.9
CDY08002	Canola	cytosol	43.97	44.84
CDY28059	Canola	cytosol	44.4	44.59
KRG92593	Soybean	cytosol	40.95	42.89
Solyc04g050780.1.1	Tomato	cytosol	37.72	40.6
PGSC0003DMT400011486	Potato	cytosol	29.74	38.66
PGSC0003DMT400039084	Potato	cytosol	36.42	38.15
Solyc04g050770.1.1	Tomato	cytosol	36.21	37.92
AT5G18320.1	Thale cress	cytosol	34.27	34.72
CDY68352	Canola	cytosol	32.76	33.33
CDY38506	Canola	cytosol	31.47	32.02
AT5G18330.1	Thale cress	cytosol	28.88	30.11
AT5G18340.1	Thale cress	nucleus	28.23	28.73
CDX70810	Canola	cytosol	28.45	27.97
EER87680	Sorghum	cytosol	35.56	27.45
Bra006451.1-P	Field mustard	cytosol	26.72	26.55
EER97464	Sorghum	cytosol	20.26	25.97
EES07310	Sorghum	cytosol	34.27	24.92
OQU79384	Sorghum	cytosol	35.56	24.77
EES15482	Sorghum	cytosol	33.19	23.95
CDY51235	Canola	extracellular, golgi	26.72	23.89
KXG20946	Sorghum	cytosol	32.54	23.48
OQU92820	Sorghum	cytosol	35.34	21.9
EER97453	Sorghum	plastid	21.77	21.58
OQU78182	Sorghum	plastid	30.6	20.91
KXG33626	Sorghum	plastid	29.31	19.37
EES04812	Sorghum	plastid	29.09	18.52
EES01872	Sorghum	cytosol	30.39	17.52
OQU80426	Sorghum	endoplasmic reticulum, plasma membrane	24.14	15.69
KXG35540	Sorghum	plasma membrane	22.41	14.53
EES14396	Sorghum	cytosol	31.47	14.5
Bra002153.1-P	Field mustard	cytosol	32.97	11.2
CDX70805	Canola	cytosol	27.37	8.24
CDY51234	Canola	cytosol	29.09	8.15
Bra006452.1-P	Field mustard	cytosol	29.09	8.13

Protein Annotations

Gene3D:1.25.10.10	MapMan:19.2.2.1.5.2.1	Gene3D:3.30.40.10	EntrezGene:8056679	InterPro:ARM-like	InterPro:ARM-type_fold
InterPro:Armadillo	UniProt:C5XRR9	EnsemblPlants:EES06804	ProteinID:EES06804	ProteinID:EES06804.1	GO:GO:0003674
GO:GO:0003824	GO:GO:0004842	GO:GO:0005102	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0005886	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009719	GO:GO:0009987	GO:GO:0016020	GO:GO:0016567
GO:GO:0016740	GO:GO:0019538	GO:GO:0070696	GO:GO:0071215	InterPro:IPR000225	InterPro:IPR003613
InterPro:IPR011989	InterPro:IPR013083	PFAM:PF00514	PFAM:PF04564	PFscan:PS51698	PANTHER:PTHR23315
PANTHER:PTHR23315:SF121	SMART:SM00504	EnsemblPlantsGene:SORBI_3004G146800	SUPFAM:SSF48371	SUPFAM:SSF57850	unigene:Sbi.8296
UniParc:UPI0001A85A6D	InterPro:Ubox_domain	RefSeq:XP_002453828.1	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:

Description

hypothetical protein

Coordinates

chr4:-:45719715..45724433

Molecular Weight (calculated)

50764.7 Da

IEP (calculated)

6.304

GRAVY (calculated)

-0.278

Length

464 amino acids

Sequence
(BLAST)

001: MAKPTPVASA EEAAAMRRRL RRLVAAVAAG SADAEAFDEA AEALAKLRDA ELGPRKDNRA GDGHGDGGQN RRRTETEAAV PEHFLCPISS EIMRDPVVLA
101: SGQTYDRRFI QEWLSAGNRT CPQTQQVLSN TIIIPNHLVR SMISQWCTDN GITLPPVENQ DEDLVTNNER KTFSKIFERI ASSSNLSEQR EAIKDLRLLT
201: KCNSSLRAAI GEKPDSISQI ISVASNPELE NNAEVLEDMV TTILNLSIHE SNKKIIGDDP LAIPFLIRTL QSGTMEARSN AAAAIFSLSA LDSNKVKIGE
301: LGVMRPLVDL LEHGSMIAKK DAASAIFNLC MLHENKSRAT KSGVIDVTLK AITDDSLVDE SLAILALLSG DHETVEEIGE TGGVASMLHV IKEDQCKRNK
401: ENAVAVLFAV CMYDRTKLRE VAEHEKLNGS LAWLVQNGTS RARRKAVGIL DKMKRTLHQP HYSC

Best Arabidopsis Sequence Match ( AT3G07360.1 )
(BLAST)

001: MAKTGVFDSD PTAIAKAKEL KREMKKLLIK IDDEDDLGVQ TIDQLQDALS ALREATMRKM AKSSSLEMLE TVSCPEEFRC PLSNELMRDP VVLASGQTYD
101: KLFIQKWLSS GNRTCPKTQQ VLPHTALTPN LLIREMISKW CKKNGLETKS QYHPNLVNED ETVTRSDREI FNSLLCKVSS SNLQDQKSAA KELRLLTRKG
201: TEFRALFGES PDEITRLVNP LLHGSNPDEK LQEDVVTTLL NISIHDDSNK KLVCENPNVI PLLIDALRRG TVATRSNAAA AIFTLSALDS NKVLIGKSGI
301: LKPLIDLLEE GNPLAIKDVA AAIFTLCIAH ENRSRAVRDG AVRVLGKKIS NGLYVDELLA ILAMLVTHWK AVEELGELGG VSWLLKITRE SECKRNKENA
401: IVILHTICFS DRTKWKEIKE EENAHGTITK LSREGTSRAQ RKANGILDRL RKAMNLTHTA

Arabidopsis Description

PUB9RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:A0A178VJC7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.