CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 2
golgi 1
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
KXG38192

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G71020.1	KXG38192	AT4G39050.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d000381_P001	Maize	cytosol	91.85	91.85
Os02t0732200-01	Rice	cytosol	83.7	83.83
TraesCS6B01G324000.1	Wheat	cytosol	82.76	82.12
TraesCS6A01G293600.1	Wheat	cytosol	82.45	82.06
TraesCS6D01G274500.1	Wheat	cytosol	82.45	82.06
HORVU6Hr1G073280.1	Barley	cytosol	81.5	64.76
VIT_01s0011g04770.t01	Wine grape	cytosol	52.82	52.74
KRG89279	Soybean	cytosol	53.6	52.53
KRH50347	Soybean	nucleus	53.29	51.99
Bra012355.1-P	Field mustard	plasma membrane	47.49	51.53
CDY21412	Canola	cytosol, endoplasmic reticulum	49.06	51.48
Bra024559.1-P	Field mustard	cytosol, plasma membrane	49.06	51.4
CDY04746	Canola	cytosol, endoplasmic reticulum	49.06	51.4
PGSC0003DMT400015349	Potato	cytosol	52.04	51.31
CDY25764	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	47.18	51.19
Solyc04g007640.2.1	Tomato	cytosol	51.72	51.0
CDY12497	Canola	cytosol	47.65	50.92
AT1G71020.1	Thale cress	cytosol	50.0	50.8
Bra016165.1-P	Field mustard	cytosol, plasma membrane	48.43	50.16
CDX96295	Canola	cytosol, plasma membrane	48.43	50.16
AT1G23030.1	Thale cress	cytosol	47.65	49.67
GSMUA_Achr9P15600_001	Banana	cytosol	52.35	49.41
CDX72769	Canola	cytosol	47.18	49.18
PGSC0003DMT400078473	Potato	cytosol	49.22	48.31
Solyc05g008230.2.1	Tomato	cytosol	48.59	47.69
CDY04747	Canola	cytosol, golgi	31.66	45.8
EER87680	Sorghum	cytosol	39.03	41.43
OQU79384	Sorghum	cytosol	40.6	38.89
EER97464	Sorghum	cytosol	19.59	34.53
KXG20946	Sorghum	cytosol	34.64	34.37
EES06804	Sorghum	cytosol	24.92	34.27
EES15482	Sorghum	cytosol	34.48	34.21
OQU92820	Sorghum	cytosol	39.97	34.05
EER97453	Sorghum	plastid	20.53	27.99
OQU78182	Sorghum	plastid	27.74	26.07
EES04812	Sorghum	plastid	29.62	25.93
KXG33626	Sorghum	plastid	26.18	23.79
EES01872	Sorghum	cytosol	28.84	22.86
OQU80426	Sorghum	endoplasmic reticulum, plasma membrane	25.39	22.69
KXG35540	Sorghum	plasma membrane	24.61	21.93
EES14396	Sorghum	cytosol	30.56	19.36

Protein Annotations

Gene3D:1.25.10.10	MapMan:19.2.2.1.5.2.1	Gene3D:3.30.40.10	EntrezGene:8068626	InterPro:ARM-like	InterPro:ARM-type_fold
InterPro:Armadillo	UniProt:C5XZC1	ncoils:Coil	EnsemblPlants:EES07310	ProteinID:EES07310	ProteinID:EES07310.1
GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0006464	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	InterPro:IPR000225
InterPro:IPR003613	InterPro:IPR011989	InterPro:IPR013083	PFAM:PF00514	PFAM:PF04564	PFscan:PS50176
PFscan:PS51698	PANTHER:PTHR23315	PANTHER:PTHR23315:SF52	SMART:SM00185	SMART:SM00504	EnsemblPlantsGene:SORBI_3004G249100
SUPFAM:SSF48371	SUPFAM:SSF57850	unigene:Sbi.18863	UniParc:UPI0001A85A94	InterPro:Ubox_domain	RefSeq:XP_002454334.1
InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr4:-:59600610..59606637

Molecular Weight (calculated)

68899.8 Da

IEP (calculated)

6.372

GRAVY (calculated)

-0.105

Length

638 amino acids

Sequence
(BLAST)

001: MATAEAAAEI VREIAAVGAA DLAAAAEPLR TDCLRLARKV SLLSHLVAEV ADAGEGDAAA AAWVRELVRA LEAARRFVAL GRTPAPAPAA AGASDQDAIC
101: KNTALQFKYV TWQLQAALAN LPHSCFQISD EVQEEVDLVR AQLRREMEKK GGFDVTVFIK VHDILAQIDN TAPQSQQPHQ QPEQSQMEKF SNDHLELQNV
201: VSLVSEISGL SKSDMTKITS ELIEGLQNVE TPESPKPDNV DSQSSDETKS SSGEVKKPDS VAIPEDFRCP ISLELMRDPV IVSTGQTYER AFIQRWIDCG
301: NRTCPKTQQK LQNLALTPNY VLRSLILQWC EEKGIEPPSR SKSDGSPLEV GGNRLAIEAL VRNLSSSSLD ERKSAAAEIR SLAKKSTDNR ILLAESSAIP
401: ALVKLLSSKD LKTQEHAVTA LLNLSIYDQN KELIVVAGAI VPIIQVLRMG SMEGRENAAA AIFSLSLIDD NKIMIGSTPG AIEALVELLQ SGSSRGKKDA
501: ATALFNLCIY QANKVRAVRA GILVPLIRML QDSSRNGAVD EALTILSVLV SHHECKTAIS KAHAIPLLID LLRSGQARNK ENAAAILLAL CKKDTENLAC
601: IGRLGAQIPL TELAKTGTDR AKRKATSLLE HLSKLQVL

Best Arabidopsis Sequence Match ( AT1G71020.1 )
(BLAST)

001: MAGGAITPDS LIGLIAEINE IPGNFGLFKK DCSDLARRVG LLTHLIEEIR DSSPPSESDA SSSLNSHECD WWSDLVVGLQ AAKRLLSSAT SFQARESSDG
101: AAKRISFQFQ CVTWKLEKAL GDLTYDRYDI SDEVREQVEL ARLQLRRAMQ RYGSLNSKKF SSGLSEPMEK DASSNRKVIE KLESIPETVH SLSDEKKFES
201: PPPWKSSSVS LAFFLSKDGD DERLEKAVTE NSDDSQKSDN LTIPEDFLCP ISLELMKDPA IVSTGQTYER SFIQRWIDCG NLSCPKTQQK LENFTLTPNY
301: VLRSLISQWC TKHNIEQPGG YMNGRTKNSD GSFRDLSGDM SAIRALVCKL SSQSIEDRRT AVSEIRSLSK RSTDNRILIA EAGAIPVLVK LLTSDGDTET
401: QENAVTCILN LSIYEHNKEL IMLAGAVTSI VLVLRAGSME ARENAAATLF SLSLADENKI IIGASGAIMA LVDLLQYGSV RGKKDAATAL FNLCIYQGNK
501: GRAVRAGIVK PLVKMLTDSS SERMADEALT ILSVLASNQV AKTAILRANA IPPLIDCLQK DQPRNRENAA AILLCLCKRD TEKLISIGRL GAVVPLMELS
601: RDGTERAKRK ANSLLELLRK SSRKLGSL

Arabidopsis Description

PUB10RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:A0A178WJE0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.