Factsheet for TraesCS6D01G274500.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, secretory
iPSORT:	secretory
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G177600.1
TraesCS1B01G202600.1
TraesCS1D01G176100.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G71020.1	TraesCS1A01G177600.1	AT4G39050.1	21798944
AT1G71020.1	TraesCS1B01G202600.1	AT4G39050.1	21798944
AT1G71020.1	TraesCS1D01G176100.1	AT4G39050.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6B01G324000.1	Wheat	cytosol	98.44	98.13
TraesCS6A01G293600.1	Wheat	cytosol	98.13	98.13
EES07310	Sorghum	cytosol	82.06	82.45
Os02t0732200-01	Rice	cytosol	81.75	82.26
Zm00001d000381_P001	Maize	cytosol	79.25	79.62
HORVU6Hr1G073280.1	Barley	cytosol	96.26	76.84
KRG89279	Soybean	cytosol	52.73	51.92
Bra012355.1-P	Field mustard	plasma membrane	47.58	51.87
KRH50347	Soybean	nucleus	52.73	51.68
CDY25764	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	47.27	51.53
CDY21412	Canola	cytosol, endoplasmic reticulum	48.36	50.99
CDY12497	Canola	cytosol	47.43	50.92
CDY04746	Canola	cytosol, endoplasmic reticulum	48.36	50.9
Bra024559.1-P	Field mustard	cytosol, plasma membrane	48.36	50.9
PGSC0003DMT400015349	Potato	cytosol	51.33	50.85
VIT_01s0011g04770.t01	Wine grape	cytosol	50.39	50.55
Bra016165.1-P	Field mustard	cytosol, plasma membrane	48.36	50.32
CDX96295	Canola	cytosol, plasma membrane	48.21	50.16
AT1G71020.1	Thale cress	cytosol	49.14	50.16
Solyc04g007640.2.1	Tomato	cytosol	50.55	50.08
AT1G23030.1	Thale cress	cytosol	46.96	49.18
CDX72769	Canola	cytosol	46.96	49.18
GSMUA_Achr9P15600_001	Banana	cytosol	51.79	49.11
PGSC0003DMT400078473	Potato	cytosol	49.14	48.46
Solyc05g008230.2.1	Tomato	cytosol	48.52	47.85
CDY04747	Canola	cytosol, golgi	31.36	45.58
TraesCS7D01G001600.2	Wheat	cytosol, plastid	40.25	42.86
TraesCS5D01G093700.1	Wheat	cytosol	40.87	38.3
TraesCS7D01G289800.1	Wheat	cytosol	35.73	35.56
TraesCS7D01G536300.1	Wheat	cytosol	34.95	34.73
TraesCS2D01G194400.1	Wheat	cytosol	19.03	33.8
TraesCS4D01G207700.2	Wheat	plastid	39.78	32.82
TraesCS2D01G275400.1	Wheat	nucleus	23.24	32.39
TraesCS2D01G197200.1	Wheat	plastid	21.22	29.63
TraesCS3D01G382500.1	Wheat	cytosol	19.97	28.96
TraesCS1D01G299400.1	Wheat	cytosol, plastid	27.15	26.09
TraesCS6D01G180400.1	Wheat	plastid	28.39	25.1
TraesCS3D01G339600.1	Wheat	plastid	26.68	24.82
TraesCS2D01G475600.1	Wheat	cytosol, plasma membrane	25.9	24.09
TraesCS5D01G204700.1	Wheat	cytosol, plasma membrane	25.9	23.68
TraesCS3D01G527900.1	Wheat	cytosol	30.11	23.23

Protein Annotations

Gene3D:1.25.10.10	MapMan:19.2.2.1.5.2.1	Gene3D:3.30.40.10	InterPro:ARM-like	InterPro:ARM-type_fold	InterPro:Armadillo
GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0005515	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538
InterPro:IPR000225	InterPro:IPR003613	InterPro:IPR011989	InterPro:IPR013083	PFAM:PF00514	PFAM:PF04564
PFscan:PS50176	PFscan:PS51698	PANTHER:PTHR23315	PANTHER:PTHR23315:SF52	SMART:SM00185	SMART:SM00504
SUPFAM:SSF48371	SUPFAM:SSF57850	EnsemblPlantsGene:TraesCS6D01G274500	EnsemblPlants:TraesCS6D01G274500.1	InterPro:Ubox_domain	InterPro:Znf_RING/FYVE/PHD
TIGR:cd16664	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr6D:-:382921440..382925071

Molecular Weight (calculated)

69157.0 Da

IEP (calculated)

6.294

GRAVY (calculated)

-0.112

Length

641 amino acids

Sequence
(BLAST)

001: MAATAGAAAE IVREIAAVGA ADLAAAPEPL RADCLRLARK VSLLTHLVAE VAEAAGEDGA AGPEAAAWVA DLLRALQAAR RFVALGRVLA LHTGAADQDV
101: NDKNIAVQFK YVTWQLQAAL TNLPHSCFQI SDEVQEEVDL VRGQLKREME KKGALDLNIF SKIHDILAHH VDNVGSQSEE PHSQPETLSL ENLRSDHLEL
201: QHVALLISEI SGISKSDIKK ITSELIEGLE NARVDDSAKP TNGDSKTSDE AKDSPDSVKK PDTVAMPEDF RCPISLELMR DPVIVSTGQT YERAFIQRWI
301: DGGNRTCPKT QQKLQNLTLT PNYVLRSLIL QWCEEKGIEP PTRSKYEGSS VEVGEDRLAI EALVRNLSCS SLDERKSAAA EIRSLAKKST DNRMLLAESG
401: AIPALVKLLS SKDPKTQEHA VTSLLNLSIY DQNKELIVVG GAIVPIIQVL RTGSMEAREN AAAAIFSLSL IDDNKIMIGS TPGAIEALVE LLKSGSSRGR
501: KDAATALFNL CIYQANKVRA VRAGILSPLV QMLQDSSSAG ATDEALTILS VLVSHHECKT AIAKAHTIPF LIDLLRSSQA RNKENAAAIL LALCKKDAQN
601: LACIGRLGAQ IPLTELSKTG SDRAKRKATS LLEHLSKLQV L

Best Arabidopsis Sequence Match ( AT1G23030.1 )
(BLAST)

001: MAGGIVSPAS LLDLIADIVE IPLNTGMFKK DCADLTRRVC LLTHLLEEIR DSTPIDSAAS SSSENDWWSD LVVGLQAAKR LLSTARFQAR DSSDGAAKRI
101: SFQFQCVTWK LEKALSNLPY DLYDISDEVG EQVELARSQL RRAMQRYGSL NSNKFSSALS EPMERDGFSN VIKIKAEEKL ESVSETLHFG EEEEKQSSPP
201: LRRSSSISLA YYLSKDADTD RLDKMVNKNT DESKKSDKLT IPVDFLCPVS LELMKDPVIV ATGQTYERAY IQRWIDCGNL TCPKTQQKLE NFTLTPNYVL
301: RSLISRWCAE HNIEQPAGYI NGRTKNSGDM SVIRALVQRL SSRSTEDRRN AVSEIRSLSK RSTDNRILIA EAGAIPVLVN LLTSEDVATQ ENAITCVLNL
401: SIYENNKELI MFAGAVTSIV QVLRAGTMEA RENAAATLFS LSLADENKII IGGSGAIPAL VDLLENGTPR GKKDAATALF NLCIYHGNKG RAVRAGIVTA
501: LVKMLSDSTR HRMVDEALTI LSVLANNQDA KSAIVKANTL PALIGILQTD QTRNRENAAA ILLSLCKRDT EKLITIGRLG AVVPLMDLSK NGTERGKRKA
601: ISLLELLRKA CQ

Arabidopsis Description

PUB11RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:A0A178WCR1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.