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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 1
  • mitochondrion 2
  • cytosol 2
  • plastid 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, nucleus
BaCelLo:nucleus
iPSORT:mitochondrion
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:plastid
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY25764 Canola cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole 96.31 97.79
Bra012355.1-P Field mustard plasma membrane 95.98 97.45
CDY04746 Canola cytosol, endoplasmic reticulum 88.11 86.37
CDY21412 Canola cytosol, endoplasmic reticulum 87.94 86.35
AT1G23030.1 Thale cress cytosol 86.93 84.8
CDY04747 Canola cytosol, golgi 61.64 83.45
CDX96295 Canola cytosol, plasma membrane 76.05 73.7
CDX72769 Canola cytosol 74.54 72.71
KRH50347 Soybean nucleus 63.82 58.26
VIT_01s0011g04770.t01 Wine grape cytosol 62.31 58.22
KRG89279 Soybean cytosol 63.15 57.91
PGSC0003DMT400015349 Potato cytosol 60.13 55.49
Solyc04g007640.2.1 Tomato cytosol 58.96 54.4
PGSC0003DMT400078473 Potato cytosol 58.12 53.38
Solyc05g008230.2.1 Tomato cytosol 57.62 52.92
Zm00001d000381_P001 Maize cytosol 51.26 47.96
EES07310 Sorghum cytosol 50.92 47.65
TraesCS6D01G274500.1 Wheat cytosol 50.92 47.43
TraesCS6B01G324000.1 Wheat cytosol 50.92 47.28
TraesCS6A01G293600.1 Wheat cytosol 50.75 47.27
Os02t0732200-01 Rice cytosol 50.42 47.25
CDY28679 Canola cytosol 19.93 45.25
GSMUA_Achr9P15600_001 Banana cytosol 47.57 42.01
CDX86080 Canola cytosol 44.72 40.7
CDX99112 Canola cytosol 44.39 40.46
CDX68380 Canola cytosol 36.01 40.41
CDX78273 Canola cytosol 42.71 40.22
CDX68379 Canola cytosol 44.22 40.12
CDY31736 Canola cytosol 41.21 38.32
CDX77213 Canola cytosol 41.04 38.1
HORVU6Hr1G073280.1 Barley cytosol 50.75 37.73
CDX91947 Canola plastid 21.11 35.69
CDY32692 Canola peroxisome 21.11 35.69
CDX74298 Canola plastid 20.94 35.31
CDY02828 Canola cytosol 20.77 35.03
CDY28059 Canola cytosol 26.97 34.85
CDY71737 Canola cytosol 26.63 34.42
CDX74050 Canola cytosol 25.8 33.77
CDY08002 Canola cytosol 25.29 33.19
CDY68037 Canola cytosol 35.18 32.06
CDX95193 Canola cytosol 34.84 31.76
CDY68352 Canola cytosol 22.95 30.04
CDY38506 Canola cytosol 22.45 29.39
CDX94661 Canola plastid 34.0 28.55
CDX73439 Canola plastid 42.55 28.19
CDX90186 Canola mitochondrion 33.67 28.19
CDY43332 Canola mitochondrion 33.33 27.68
CDY37666 Canola cytosol, plastid 30.49 27.53
CDY43686 Canola plastid 30.49 27.53
CDY18649 Canola cytosol, plastid 32.83 27.53
CDY48332 Canola mitochondrion, plastid 32.33 27.41
CDX81323 Canola cytosol, plastid 33.0 27.25
CDX99816 Canola plastid 32.83 27.07
CDX76873 Canola cytosol, plastid 33.84 27.04
CDX90518 Canola plastid 20.27 26.59
CDY09688 Canola cytosol 19.93 26.21
CDX78262 Canola cytosol 30.32 25.78
CDX73449 Canola cytosol 30.32 25.71
CDY57440 Canola cytosol 28.31 25.64
CDY12838 Canola cytosol 29.31 25.04
CDX71307 Canola cytosol 27.81 24.67
CDY31406 Canola cytosol 27.81 24.63
CDY02891 Canola cytosol 29.98 24.29
CDY64696 Canola cytosol, extracellular, mitochondrion, plastid 29.98 24.25
CDX70810 Canola cytosol 19.1 24.15
CDY38931 Canola cytosol 24.46 23.74
CDY51235 Canola extracellular, golgi 19.93 22.93
CDX93411 Canola mitochondrion 26.13 22.35
CDY55050 Canola cytosol 25.96 22.27
CDY24520 Canola cytosol 24.29 21.51
CDY54132 Canola cytosol 23.95 21.03
CDY46092 Canola endoplasmic reticulum, golgi, plasma membrane, plastid 33.33 19.26
CDY04344 Canola cytosol 8.88 16.61
CDY04342 Canola cytosol 9.21 16.52
CDX70805 Canola cytosol 20.44 7.92
CDY51234 Canola cytosol 19.6 7.06
Protein Annotations
Gene3D:1.25.10.10MapMan:19.2.2.1.5.2.1Gene3D:3.30.40.10GO:A0A078FHP9UniProt:A0A078FHP9InterPro:ARM-like
InterPro:ARM-type_foldInterPro:ArmadilloEnsemblPlants:CDY12497ProteinID:CDY12497ProteinID:CDY12497.1ncoils:Coil
GO:GO:0003674GO:GO:0003824GO:GO:0004842GO:GO:0005488GO:GO:0005515GO:GO:0006464
GO:GO:0008150GO:GO:0008152GO:GO:0009987GO:GO:0016567GO:GO:0016740GO:GO:0019538
EnsemblPlantsGene:GSBRNA2T00061813001InterPro:IPR000225InterPro:IPR003613InterPro:IPR011989InterPro:IPR013083PFAM:PF00514
PFAM:PF04564PFscan:PS50176PFscan:PS51698PANTHER:PTHR23315PANTHER:PTHR23315:SF52SMART:SM00185
SMART:SM00504SUPFAM:SSF48371SUPFAM:SSF57850UniPathway:UPA00143UniParc:UPI0004EEADB3InterPro:Ubox_domain
InterPro:Znf_RING/FYVE/PHDSEG:seg::::
Description
BnaC07g13370DRING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:A0A078FHP9]
Coordinates
chrLK032023:-:384809..387342
Molecular Weight (calculated)
65943.7 Da
IEP (calculated)
8.028
GRAVY (calculated)
-0.136
Length
597 amino acids
Sequence
(BLAST)
001: MAGVIIPPAS LLKRIAEIAE IPLNAGVFKK DCTDLTRRVS LLTHLIEEIK DSNQIDSAAS SSSENDWWSD LVVALEASKR LLSSAVRFQA RDSSDVAAKR
101: ISFQFQCVTW KLEKALSNLP YDLYDISDEV REQVELARSQ LRRAMQRYGL LNSNKFSSAL FELMERDVKI KAEEEKDESV AETLHLAEEK KQLTKSPSIS
201: LAFYLSKDAD SERLDKMVTK NTDESSKLTV PVDFLCPVSL ELMKDPVIVS TGQTYERAYI QRWIDCGNLT CPKTQQKLQN FTLTPNYVLR SLISRWCTEH
301: NIEQPANGRC GDMSMIRSLV RSLSNRSLEE RRNAVSEIRS MSKRSTDNRI MIAEAGAIPV LVNLLTTSED VATQENAITC LLNLSIYDNN KELIMFAGAV
401: TSIVQVLRAG TMEARENAAA TLFSLSLADE NKIIIGGSGA IPALVDLLEN GTPRGKKDAA TALFNLCIYQ GNKGRAVRAG IVPALVKMLS ETSSHRMMVD
501: EALTILSVLA SNLDAKSAMV KANTLPALIG ILQTGQGRNR ENAAAILLSL CKRDNERLVL IGRLGAVVPL MELSKNGTER GQRKAVSLLE LLRKACQ
Best Arabidopsis Sequence Match ( AT1G23030.1 )
(BLAST)
001: MAGGIVSPAS LLDLIADIVE IPLNTGMFKK DCADLTRRVC LLTHLLEEIR DSTPIDSAAS SSSENDWWSD LVVGLQAAKR LLSTARFQAR DSSDGAAKRI
101: SFQFQCVTWK LEKALSNLPY DLYDISDEVG EQVELARSQL RRAMQRYGSL NSNKFSSALS EPMERDGFSN VIKIKAEEKL ESVSETLHFG EEEEKQSSPP
201: LRRSSSISLA YYLSKDADTD RLDKMVNKNT DESKKSDKLT IPVDFLCPVS LELMKDPVIV ATGQTYERAY IQRWIDCGNL TCPKTQQKLE NFTLTPNYVL
301: RSLISRWCAE HNIEQPAGYI NGRTKNSGDM SVIRALVQRL SSRSTEDRRN AVSEIRSLSK RSTDNRILIA EAGAIPVLVN LLTSEDVATQ ENAITCVLNL
401: SIYENNKELI MFAGAVTSIV QVLRAGTMEA RENAAATLFS LSLADENKII IGGSGAIPAL VDLLENGTPR GKKDAATALF NLCIYHGNKG RAVRAGIVTA
501: LVKMLSDSTR HRMVDEALTI LSVLANNQDA KSAIVKANTL PALIGILQTD QTRNRENAAA ILLSLCKRDT EKLITIGRLG AVVPLMDLSK NGTERGKRKA
601: ISLLELLRKA CQ
Arabidopsis Description
PUB11RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:A0A178WCR1]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.