CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 1
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Predotar:	plastid
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT2G23140.1	Thale cress	cytosol	89.83	80.94
KRH17146	Soybean	cytosol	24.23	76.05
TraesCS3B01G443200.1	Wheat	cytosol, endoplasmic reticulum	24.5	72.05
CDY46092	Canola	endoplasmic reticulum, golgi, plasma membrane, plastid	98.13	70.96
CDY38931	Canola	cytosol	58.37	70.89
GSMUA_Achr9P12570_001	Banana	cytosol	27.98	69.67
GSMUA_Achr4P01530_001	Banana	plasma membrane	48.33	59.08
TraesCS3B01G422200.1	Wheat	cytosol	33.47	56.56
TraesCS3A01G390200.1	Wheat	cytosol	33.07	56.26
TraesCS3D01G382500.1	Wheat	cytosol	33.07	55.88
HORVU3Hr1G081380.1	Barley	cytosol	32.53	54.98
Solyc01g014230.2.1	Tomato	cytosol	58.5	53.88
KRH30135	Soybean	cytosol	60.37	53.82
KRH72794	Soybean	plasma membrane	58.37	53.63
KRG98177	Soybean	cytosol	60.11	53.39
CDY18649	Canola	cytosol, plastid	50.74	53.23
Solyc12g100000.1.1	Tomato	cytosol, plastid	58.23	53.11
CDX81323	Canola	cytosol, plastid	51.14	52.84
PGSC0003DMT400046295	Potato	cytosol	57.56	52.38
VIT_07s0129g00590.t01	Wine grape	cytosol	59.17	52.12
CDY28679	Canola	cytosol	17.4	49.43
CDY57440	Canola	cytosol	42.84	48.56
CDY12838	Canola	cytosol	44.85	47.93
TraesCS3D01G527900.1	Wheat	cytosol	53.01	47.65
Os08t0110500-01	Rice	plasma membrane	52.48	47.57
TraesCS3A01G521300.1	Wheat	cytosol	52.74	47.41
TraesCS3B01G591000.1	Wheat	cytosol	52.74	47.41
HORVU3Hr1G113910.3	Barley	cytosol	52.88	47.14
Zm00001d035040_P007	Maize	mitochondrion	51.54	44.15
CDX74298	Canola	plastid	20.88	44.07
CDX91947	Canola	plastid	20.75	43.91
PGSC0003DMT400027406	Potato	cytosol	15.66	43.82
CDY32692	Canola	peroxisome	20.35	43.06
CDY02828	Canola	cytosol	20.35	42.94
Os01t0884400-01	Rice	plasma membrane	47.52	42.36
EES01872	Sorghum	cytosol	45.25	41.99
TraesCS3A01G410100.1	Wheat	cytosol	29.59	41.78
TraesCS3B01G443500.1	Wheat	cytosol	29.45	41.59
Zm00001d049708_P007	Maize	cytosol	48.86	41.38
CDX73449	Canola	cytosol	38.55	40.91
CDX78262	Canola	cytosol	38.15	40.6
CDY02891	Canola	cytosol	39.63	40.16
CDY64696	Canola	cytosol, extracellular, mitochondrion, plastid	39.63	40.11
EES14396	Sorghum	cytosol	52.61	39.03
TraesCS3A01G410000.1	Wheat	cytosol	32.4	38.17
Zm00001d042608_P002	Maize	cytosol	45.65	36.86
CDX78273	Canola	cytosol	30.66	36.12
CDY09688	Canola	cytosol	21.55	35.46
CDX90518	Canola	plastid	21.55	35.38
CDX99112	Canola	cytosol	30.52	34.81
CDX86080	Canola	cytosol	30.39	34.6
CDX68380	Canola	cytosol	24.63	34.59
CDY25764	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	27.04	34.35
CDX68379	Canola	cytosol	30.25	34.35
CDY12497	Canola	cytosol	27.04	33.84
CDY21412	Canola	cytosol, endoplasmic reticulum	27.31	33.55
CDY04746	Canola	cytosol, endoplasmic reticulum	27.31	33.5
CDY68037	Canola	cytosol	28.65	32.67
CDX95193	Canola	cytosol	28.51	32.52
CDY71737	Canola	cytosol	20.08	32.47
CDY31736	Canola	cytosol	27.71	32.24
CDX74050	Canola	cytosol	19.68	32.24
CDX77213	Canola	cytosol	27.58	32.04
CDY28059	Canola	cytosol	19.68	31.82
CDY08002	Canola	cytosol	19.28	31.65
CDX96295	Canola	cytosol, plasma membrane	25.84	31.33
CDX72769	Canola	cytosol	25.03	30.56
CDY48332	Canola	mitochondrion, plastid	27.18	28.84
CDY04747	Canola	cytosol, golgi	17.0	28.8
CDY68352	Canola	cytosol	17.54	28.73
CDX99816	Canola	plastid	26.91	27.76
CDX94661	Canola	plastid	26.37	27.71
CDY43332	Canola	mitochondrion	26.64	27.68
CDY38506	Canola	cytosol	16.87	27.63
CDX90186	Canola	mitochondrion	26.37	27.63
CDY43686	Canola	plastid	24.1	27.23
CDY37666	Canola	cytosol, plastid	23.96	27.08
CDX71307	Canola	cytosol	23.29	25.85
CDY31406	Canola	cytosol	23.29	25.82
CDX73439	Canola	plastid	30.66	25.42
CDX70810	Canola	cytosol	13.79	21.82
CDY24520	Canola	cytosol	19.14	21.22
CDY54132	Canola	cytosol	19.14	21.03
CDY55050	Canola	cytosol	19.54	20.98
CDX93411	Canola	mitochondrion	19.54	20.92
CDY51235	Canola	extracellular, golgi	14.19	20.42
CDY04344	Canola	cytosol	7.1	16.61
CDY04342	Canola	cytosol	7.1	15.92
CDX70805	Canola	cytosol	15.13	7.33
CDY51234	Canola	cytosol	14.99	6.76

Protein Annotations

Gene3D:1.25.10.10	Gene3D:3.30.40.10	MapMan:35.1	GO:A0A078CP67	InterPro:ARM-like	InterPro:ARM-type_fold
InterPro:Armadillo	EnsemblPlants:CDX76873	ProteinID:CDX76873	ProteinID:CDX76873.1	ncoils:Coil	GO:GO:0003674
GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0005515	GO:GO:0006464	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00127387001
InterPro:IPR000225	InterPro:IPR003613	InterPro:IPR011989	InterPro:IPR013083	PFAM:PF00514	PFAM:PF04564
PFscan:PS50176	PFscan:PS51698	PANTHER:PTHR23315	PANTHER:PTHR23315:SF220	SMART:SM00185	SMART:SM00504
SUPFAM:SSF48371	SUPFAM:SSF57850	UniPathway:UPA00143	UniParc:UPI0004EF3266	InterPro:Ubox_domain	InterPro:Znf_RING/FYVE/PHD
SEG:seg	:	:	:	:	:

Description

BnaC08g34590D

Coordinates

chrLK031808:+:1690448..1693658

Molecular Weight (calculated)

81136.2 Da

IEP (calculated)

5.220

GRAVY (calculated)

-0.226

Length

747 amino acids

Sequence
(BLAST)

001: MGTSALVDSI SSFLNLSSSR HIDLDPFEKY YKRVEELLIV LKPVADAAAI NSDLVSEERI GKSFDDLTQD VDHSIDLFRS WHAFSSKVYF VLQIESLIPK
101: MRETIVDTFH FLMSFESNLP DDLTPPSLEK CLEKVKQLSY EEISSVIDGA LRDQRDGVGP TPDVLVTIGE NTGLRSNQEI LIEAVALERQ KEIAEQSENN
201: SEVEFLDQLI VIVNRMHERL LLIKQTQTSS VAILADFFCP LSLEVMTDPV IVSSGQTYEK AFIKRWIDLG LKVCPKTRQT LTHTTLIPNY TVKALIANWC
301: ETNDVKLPDP NKSTSLNELS PLLSCTESAP NAPGRSSVSS TTRGSVENGQ TSENHHHLRS PSAASSVSNE DSPRADANEN SEESPHATPY SSDASGEIRS
401: GPLAAATTSA APPRRDLSDF SPKFMDRRSR GQFWRRPSER LGSRIVSAPS SETRRDLIEV ENQVKKLVEE LKSSSLDVQR QATAEIRLLA KHNMDNRIVI
501: GNSGAIVLLV ELLHSTDSAT QENAVTALLN LSINDNNKSL IAAAGAIEPL IHVLQNGSSE AKENAAATLF SLSVIEELKI KIGQSGAIAP LVDLLGNGTP
601: RGKKDAATAL FNLSIHQENK GTIVQSGAVR YLIDLMDPAA GMVDKAVAVL ANLATIPEGR NAIGQEGGIG LLVEVVELGS ARGKENAAAA LLQLSTNSGR
701: FCNMVLQEGA VPPLVALSQS GTPRAREKAQ ALLSYFRNQR HGNAGRG

Best Arabidopsis Sequence Match ( AT2G23140.4 )
(BLAST)

001: MEVLLRSISS FLNLSSSKHI DLDPFEKYYK RVEELLRVLK PIADVVVTSD FVFDEKLGKA FEELTQDVDQ SIDLFRSWQA FSSKVYFVLQ IESLLPKMRD
101: TIVDTFQFLM SSKNHLPDEL SPASLEQCLE KIKHLSYEEI SSVIDGALRD QRDGVGPSPE ILVKIGENTG LRSNQEILIE AVALERQKEM AEQSENNAEV
201: EFLDQLIVIV NRMHERLLLI KQTQTSSVAI LADFFCPLSL EVMTDPVIVS SGQTYEKAFI KRWIDLGLKV CPKTRQTLTH TTLIPNYTVK ALIANWCETN
301: DVKLPDPNKS TSLNELSPLL SCTDSIPSTG ADVSARKVSN KSHDWDASSS ETGKPSFSSR ATEREGASPS RPASALGASS PGISGNGYGL DARRGSLNDF
401: EDRSNDSREL RTDAPGRSSV SSTTRGSVEN GQTSENHHHR SPSATSTVSN EEFPRADANE NSEESAHATP YSSDASGEIR SGPLAATTSA ATRRDLSDFS
501: PKFMDRRTRG QFWRRPSERL GSRIVSAPSN ETRRDLSEVE TQVKKLVEEL KSSSLDTQRQ ATAELRLLAK HNMDNRIVIG NSGAIVLLVE LLYSTDSATQ
601: ENAVTALLNL SINDNNKKAI ADAGAIEPLI HVLENGSSEA KENSAATLFS LSVIEENKIK IGQSGAIGPL VDLLGNGTPR GKKDAATALF NLSIHQENKA
701: MIVQSGAVRY LIDLMDPAAG MVDKAVAVLA NLATIPEGRN AIGQEGGIPL LVEVVELGSA RGKENAAAAL LQLSTNSGRF CNMVLQEGAV PPLVALSQSG
801: TPRAREKAQA LLSYFRNQRH GNAGRG

Arabidopsis Description

RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:F4ILG6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.