CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, golgi, plastid, plasma membrane

Predictor Summary:

nucleus 1
plastid 2
endoplasmic reticulum 1
mitochondrion 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX76873	Canola	cytosol, plastid	70.96	98.13
AT2G23140.1	Thale cress	cytosol	65.34	81.42
KRH17146	Soybean	cytosol	17.52	76.05
TraesCS3B01G443200.1	Wheat	cytosol, endoplasmic reticulum	17.72	72.05
CDY38931	Canola	cytosol	42.3	71.06
GSMUA_Achr9P12570_001	Banana	cytosol	20.33	70.0
GSMUA_Achr4P01530_001	Banana	plasma membrane	35.43	59.9
TraesCS3B01G422200.1	Wheat	cytosol	24.1	56.33
TraesCS3A01G390200.1	Wheat	cytosol	23.81	56.04
TraesCS3D01G382500.1	Wheat	cytosol	23.81	55.66
KRH72794	Soybean	plasma membrane	43.27	54.98
HORVU3Hr1G081380.1	Barley	cytosol	23.43	54.75
KRH30135	Soybean	cytosol	43.95	54.18
KRG98177	Soybean	cytosol	43.95	53.98
Solyc01g014230.2.1	Tomato	cytosol	41.92	53.39
CDY18649	Canola	cytosol, plastid	36.69	53.23
VIT_07s0129g00590.t01	Wine grape	cytosol	43.66	53.18
CDX81323	Canola	cytosol, plastid	37.08	52.97
Solyc12g100000.1.1	Tomato	cytosol, plastid	41.92	52.87
PGSC0003DMT400046295	Potato	cytosol	41.63	52.38
CDY28679	Canola	cytosol	12.58	49.43
CDY57440	Canola	cytosol	30.78	48.25
CDY12838	Canola	cytosol	32.33	47.78
Os08t0110500-01	Rice	plasma membrane	38.04	47.69
TraesCS3D01G527900.1	Wheat	cytosol	38.24	47.53
TraesCS3B01G591000.1	Wheat	cytosol	38.14	47.41
TraesCS3A01G521300.1	Wheat	cytosol	38.04	47.29
HORVU3Hr1G113910.3	Barley	cytosol	38.33	47.26
Zm00001d035040_P007	Maize	mitochondrion	37.56	44.5
CDX74298	Canola	plastid	15.0	43.79
CDX91947	Canola	plastid	14.91	43.63
PGSC0003DMT400027406	Potato	cytosol	11.23	43.45
CDY32692	Canola	peroxisome	14.62	42.78
CDY02828	Canola	cytosol	14.62	42.66
Os01t0884400-01	Rice	plasma membrane	34.46	42.48
EES01872	Sorghum	cytosol	32.91	42.24
TraesCS3A01G410100.1	Wheat	cytosol	21.2	41.4
TraesCS3B01G443500.1	Wheat	cytosol	21.2	41.4
Zm00001d049708_P007	Maize	cytosol	35.24	41.27
CDX73449	Canola	cytosol	27.98	41.05
EES14396	Sorghum	cytosol	39.79	40.81
CDX78262	Canola	cytosol	27.69	40.74
CDY02891	Canola	cytosol	28.65	40.16
CDY64696	Canola	cytosol, extracellular, mitochondrion, plastid	28.65	40.11
TraesCS3A01G410000.1	Wheat	cytosol	23.23	37.85
Zm00001d042608_P002	Maize	cytosol	33.79	37.73
CDX78273	Canola	cytosol	21.97	35.8
CDY09688	Canola	cytosol	15.39	35.02
CDX90518	Canola	plastid	15.39	34.95
CDX99112	Canola	cytosol	21.97	34.66
CDX86080	Canola	cytosol	21.88	34.45
CDX68380	Canola	cytosol	17.72	34.4
CDX68379	Canola	cytosol	21.78	34.19
CDY25764	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	19.36	34.01
CDY21412	Canola	cytosol, endoplasmic reticulum	19.65	33.39
CDY04746	Canola	cytosol, endoplasmic reticulum	19.65	33.33
CDY12497	Canola	cytosol	19.26	33.33
CDX95193	Canola	cytosol	20.72	32.67
CDY68037	Canola	cytosol	20.72	32.67
CDY31736	Canola	cytosol	20.04	32.24
CDX77213	Canola	cytosol	19.94	32.04
CDY71737	Canola	cytosol	14.33	32.03
CDX74050	Canola	cytosol	14.04	31.8
CDY28059	Canola	cytosol	14.04	31.39
CDX96295	Canola	cytosol, plasma membrane	18.68	31.33
CDY08002	Canola	cytosol	13.75	31.21
CDX72769	Canola	cytosol	18.01	30.39
CDY68352	Canola	cytosol	12.78	28.95
CDY48332	Canola	mitochondrion, plastid	19.55	28.69
CDY04747	Canola	cytosol, golgi	12.2	28.57
CDY38506	Canola	cytosol	12.29	27.85
CDY43686	Canola	plastid	17.81	27.84
CDY37666	Canola	cytosol, plastid	17.72	27.69
CDY43332	Canola	mitochondrion	19.26	27.68
CDX90186	Canola	mitochondrion	19.07	27.63
CDX94661	Canola	plastid	18.97	27.57
CDX99816	Canola	plastid	19.26	27.49
CDX71307	Canola	cytosol	16.84	25.85
CDY31406	Canola	cytosol	16.84	25.82
CDX73439	Canola	plastid	22.46	25.75
CDX70810	Canola	cytosol	10.16	22.25
CDY24520	Canola	cytosol	13.94	21.36
CDY54132	Canola	cytosol	13.94	21.18
CDY55050	Canola	cytosol	14.23	21.12
CDX93411	Canola	mitochondrion	14.23	21.06
CDY51235	Canola	extracellular, golgi	10.55	21.0
CDY04344	Canola	cytosol	5.23	16.93
CDY04342	Canola	cytosol	5.23	16.22
CDX70805	Canola	cytosol	11.13	7.46
CDY51234	Canola	cytosol	11.04	6.88

Protein Annotations

Gene3D:1.25.10.10	MapMan:24.2.3.10	Gene3D:3.30.40.10	GO:A0A078I7N4	UniProt:A0A078I7N4	InterPro:ARM-like
InterPro:ARM-type_fold	InterPro:Armadillo	EnsemblPlants:CDY46092	ProteinID:CDY46092	ProteinID:CDY46092.1	ncoils:Coil
GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005215	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0006464	GO:GO:0006810	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016020	GO:GO:0016021	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	GO:GO:0030001
GO:GO:0046873	EnsemblPlantsGene:GSBRNA2T00083247001	InterPro:IPR000225	InterPro:IPR003613	InterPro:IPR011989	InterPro:IPR013083
InterPro:NRAMP_fam	PFAM:PF00514	PFAM:PF01566	PFAM:PF04564	PRINTS:PR00447	PFscan:PS50176
PFscan:PS51698	PANTHER:PTHR23315	PANTHER:PTHR23315:SF220	SMART:SM00185	SMART:SM00504	SUPFAM:SSF48371
SUPFAM:SSF57850	TMHMM:TMhelix	UniPathway:UPA00143	UniParc:UPI0004EEA61A	InterPro:Ubox_domain	InterPro:Znf_RING/FYVE/PHD
SEG:seg	:	:	:	:	:

Description

BnaA09g42160DRING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:A0A078I7N4]

Coordinates

chrLK032649:+:189148..194311

Molecular Weight (calculated)

112681.0 Da

IEP (calculated)

5.868

GRAVY (calculated)

-0.010

Length

1033 amino acids

Sequence
(BLAST)

0001: MAVAFAWMFG QAKPSGSELL VGILVPKLSS RTIQKAVGVV GCIIMPHNVF LHSALVQSRE VDKRQKHRVQ EAINYYTIES TIALAVSFMI NLFVTTVFAK
0101: GFYNTDQADS IGLVNAGQYL QDKYGGGVFP ILYIWGIGLL AAGQSSTITG TYAGQFIMGG FLNFKMKKWL RALITRSCAI IPTIIVALVF DSSEATLDVL
0201: NEWLNVLQSM QIPFALIPLL CLVSKEQIMG SFKIGPLYQT VAWLVAALVI MINGYLLLEF FSSEVSGVVY TGFVTVFTAS YGWEEMGTSA LVDSISSFLN
0301: LSSSRHIDLD PFEKYYKRVE ELLIVLKPVA DAASINSHLV SEERIGKSFD DLTQDVDHSI DLFRSWHAFS SKVYFVLQIE SLIPKMRETI VDTFHFLMSF
0401: ESNLPDELSP PSLEKCLEKV KQLSYEEISS VIDGALRDQR DGAGPTPEVL VRIGENTGLR SNQEILIEAV ALERQKEIAE QSENNSEVEF LDQLIVIVNR
0501: MHERLLLIKQ TQTSSVAILA DFFCPLSLEV MTDPVIVSSG QTYEKAFIKR WIDLGLKVCP KTRQTLTHTT LIPNYTVKAL IANWCETNDV KLPDPNKSTS
0601: LNELSPLLSC TDSVPNAPGR SSVSSTTRGS VENGQTSENH HHLRSPSAAS SVSNEDSPRA EANENSEESP HATPYSSDAS GEIRSGPLAA ATTSAAAPPR
0701: RDLSDFSPKF MDRRSRGQFW RRPSERLGSR IVSAPSNETR RELIEVENQV KKLVEELKSS SLDVQRQATA EIRLLAKHNM DNRIVIGNSG AIVLLVELLH
0801: STDSATQENA VTALLNLSIN DNNKSLIAQA GAIEPLIHVL QNGSSEAKEN AAATLFSLSV IEELKIKIGQ SGAIGPLVDL LGNGTPRGKK DAATALFNLS
0901: IHQENKGTIV QSGAVRYLID LMDPAAGMVD KAVAVLANLA TIPEGRNAIG QEGGIGLLVE VVELGSARGK ENAAAALLQL STNSGRFCNM VLQEGAVPPL
1001: VALSQSGTPR AREKAQALLS YFRNQRHGNA GRG

Best Arabidopsis Sequence Match ( AT2G23140.1 )
(BLAST)

001: MVEMEVLLRS ISSFLNLSSS KHIDLDPFEK YYKRVEELLR VLKPIADVVV TSDFVFDEKL GKAFEELTQD VDQSIDLFRS WQAFSSKVYF VLQIESLLPK
101: MRDTIVDTFQ FLMSSKNHLP DELSPASLEQ CLEKIKHLSY EEISSVIDGA LRDQRDGVGP SPEILVKIGE NTGLRSNQEI LIEAVALERQ KEMAEQSENN
201: AEVEFLDQLI VIVNRMHERL LLIKQTQTSS VAILADFFCP LSLEVMTDPV IVSSGQTYEK AFIKRWIDLG LKVCPKTRQT LTHTTLIPNY TVKALIANWC
301: ETNDVKLPDP NKSTSLNELS PLLSCTDSIP STGADVSARK VSNKSHDWDA SSSETGKPSF SSRATEREGA SPSRPASALG ASSPGISGNG YGLDARRGSL
401: NDFEDRSNDS RELRTDAPGR SSVSSTTRGS VENGQTSENH HHRSPSATST VSNEEFPRAD ANENSEESAH ATPYSSDASG EIRSGPLAAT TSAATRRDLS
501: DFSPKFMDRR TRGQFWRRPS ERLGSRIVSA PSNETRRDLS EVETQVKKLV EELKSSSLDT QRQATAELRL LAKHNMDNRI VIGNSGAIVL LVELLYSTDS
601: ATQENAVTAL LNLSINDNNK KAIADAGAIE PLIHVLENGS SEAKENSAAT LFSLSVIEEN KIKIGQSGAI GPLVDLLGNG TPRGKKDAAT ALFNLSIHQE
701: NKAMIVQSGA VRYLIDLMDP AAGMVDKAVA VLANLATIPE GRNAIGQEGG IPLLVEVVEL GSARGKENAA AALLQLSTNS GRFCNMVLQE GAVPPLVALS
801: QSGTPRAREK AQALLSYFRN QRHGNAGRG

Arabidopsis Description

RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:F4ILG6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.