CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
mitochondrion 3
cytosol 2
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX78262	Canola	cytosol	93.18	93.45
CDY02891	Canola	cytosol	87.07	83.17
CDY64696	Canola	cytosol, extracellular, mitochondrion, plastid	86.08	82.11
AT3G54790.1	Thale cress	cytosol	85.51	79.21
VIT_07s0005g03520.t01	Wine grape	cytosol	57.53	51.46
CDY28679	Canola	cytosol	17.61	47.15
KRG95672	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	53.98	46.68
GSMUA_Achr6P36530_001	Banana	cytosol	43.75	46.67
PGSC0003DMT400026700	Potato	cytosol	50.14	45.37
Solyc09g025270.2.1	Tomato	cytosol	48.15	45.26
GSMUA_Achr5P21360_001	Banana	cytosol	46.73	43.35
KRH67390	Soybean	cytosol, plastid	52.7	43.34
CDX74298	Canola	plastid	20.31	40.4
CDX91947	Canola	plastid	20.17	40.23
CDY18649	Canola	cytosol, plastid	40.48	40.03
CDX81323	Canola	cytosol, plastid	40.62	39.56
CDY32692	Canola	peroxisome	19.6	39.09
KRH32190	Soybean	cytosol	36.79	39.06
CDX76873	Canola	cytosol, plastid	40.91	38.55
CDY02828	Canola	cytosol	19.32	38.42
CDY57440	Canola	cytosol	34.09	36.42
CDY12838	Canola	cytosol	35.94	36.19
CDX90518	Canola	plastid	21.59	33.41
CDY09688	Canola	cytosol	21.16	32.82
CDX78273	Canola	cytosol	29.4	32.65
CDY38931	Canola	cytosol	27.56	31.54
CDX74050	Canola	cytosol	20.31	31.36
CDY71737	Canola	cytosol	20.45	31.17
CDY31736	Canola	cytosol	28.41	31.15
CDY28059	Canola	cytosol	20.31	30.95
CDY25764	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	25.85	30.95
CDX68379	Canola	cytosol	28.84	30.85
CDX99112	Canola	cytosol	28.55	30.69
CDY08002	Canola	cytosol	19.74	30.55
CDX86080	Canola	cytosol	28.41	30.49
CDY12497	Canola	cytosol	25.71	30.32
CDX95193	Canola	cytosol	27.98	30.08
CDY04746	Canola	cytosol, endoplasmic reticulum	25.99	30.05
CDY21412	Canola	cytosol, endoplasmic reticulum	25.85	29.93
CDY68037	Canola	cytosol	27.84	29.92
CDX96295	Canola	cytosol, plasma membrane	26.14	29.87
CDX77213	Canola	cytosol	27.27	29.86
CDX72769	Canola	cytosol	25.71	29.58
CDX68380	Canola	cytosol	22.3	29.51
CDY68352	Canola	cytosol	18.75	28.95
CDY46092	Canola	endoplasmic reticulum, golgi, plasma membrane, plastid	41.05	27.98
CDY38506	Canola	cytosol	17.76	27.41
CDY04747	Canola	cytosol, golgi	15.91	25.4
CDY48332	Canola	mitochondrion, plastid	24.15	24.15
CDX99816	Canola	plastid	24.01	23.34
CDX90186	Canola	mitochondrion	23.58	23.28
CDX94661	Canola	plastid	23.44	23.21
CDY43332	Canola	mitochondrion	23.58	23.09
CDY43686	Canola	plastid	21.59	23.0
CDY37666	Canola	cytosol, plastid	21.59	23.0
CDX73439	Canola	plastid	29.4	22.97
CDX70810	Canola	cytosol	15.2	22.67
CDY31406	Canola	cytosol	21.59	22.55
CDX71307	Canola	cytosol	21.45	22.44
CDY51235	Canola	extracellular, golgi	15.62	21.19
CDY55050	Canola	cytosol	20.03	20.26
CDX93411	Canola	mitochondrion	19.6	19.77
CDY24520	Canola	cytosol	18.75	19.58
CDY54132	Canola	cytosol	18.47	19.12
CDY04344	Canola	cytosol	7.39	16.3
CDY04342	Canola	cytosol	7.24	15.32
CDX70805	Canola	cytosol	16.19	7.4
CDY51234	Canola	cytosol	16.62	7.06

Protein Annotations

Gene3D:1.25.10.10	Gene3D:3.30.40.10	MapMan:35.1	GO:A0A078CB60	InterPro:ARM-like	InterPro:ARM-type_fold
InterPro:Armadillo	EnsemblPlants:CDX73449	ProteinID:CDX73449	ProteinID:CDX73449.1	GO:GO:0003674	GO:GO:0003824
GO:GO:0004842	GO:GO:0005488	GO:GO:0005515	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00108952001	InterPro:IPR000225
InterPro:IPR003613	InterPro:IPR011989	InterPro:IPR013083	PFAM:PF00514	PFAM:PF04564	PFscan:PS50176
PFscan:PS51698	PANTHER:PTHR23315	PANTHER:PTHR23315:SF119	SMART:SM00185	SMART:SM00504	SUPFAM:SSF48371
SUPFAM:SSF57850	UniPathway:UPA00143	UniParc:UPI0004EB630D	InterPro:Ubox_domain	InterPro:Znf_RING/FYVE/PHD	SEG:seg

Description

BnaC08g25540D

Coordinates

chrLK031799:+:446082..449332

Molecular Weight (calculated)

77238.6 Da

IEP (calculated)

5.699

GRAVY (calculated)

-0.146

Length

704 amino acids

Sequence
(BLAST)

001: MDPVPVRCLL NSISRYLHLV ACQTIRYNPI QTRIGNVVHL LNLLKPFLDE VVDCKTPPDD DCLNSACEDL DSVVNQAREF LEDCSPKLSK LFGVFHCELL
101: LEKVQTCSLK ITGILLQLSQ ASSSVQGVER CMEEIECFKQ ERTLTEHINN ALRNQTDDND DLDSIIQMIG LVSNQDLLKE SIAVEKEQMD QLIDLVSCIR
201: EHMLKTEFLE VAKGVSTPPY FRCPLSTELM VDPVIVASGQ TFDRTSIKEW LDNGLAVCPR TRQVLSHQEL IPNYTVKAMI ESWLEANNIT LAVNSGADAS
301: SIANNMGSND FNRTESFRFS LRSSSFTSRS SVEAGNGFEK VKINVPASVS KDFEIFELSS QEQSYTHSRS ESVCSVVSSV DYVPSLTSET QSLPMNQQSY
401: SEASTNECSV QTMMTSHTIK LVEDLKTGSN KEKTAAAAEI RRLTINSVEN RVHIGRCGAI TPLLSLLYSE EKLTQEQAVT ALLNLSISEV NKAMIVEAGA
501: IEPLVHVLNT GNDRTKENSA ATLFSLSVVQ VNRERIGQCN AAIHALVSLL GKGTLRGKKD AASALFNLSI THENKARIVQ AKAVKYLVEM LDPGLEMVDK
601: AVALLANLSG VGEGRQEIVR GGGVPLLVET VDSGSGRGKE NAASVLLQLC LNSPKFCTLV LQEGAIPPLV ALSQSGTQRA KEKAQQLLSH FRNQRGARMK
701: KGRS

Best Arabidopsis Sequence Match ( AT3G54790.3 )
(BLAST)

001: MDPVPVRCLL NSISRYLHLV ACQTIRFNPI QTCIGNMVLL LKLLKPLLDE VVDCKIPSDD CLYKGCEDLD SVVNQAREFL EDWSPKLSKL FGVFQCEVLL
101: GKVQTCSLEI SRILLQLSQS SPVTSSVQSV ERCVQETESF KQEGTLMELM ENALRNQKDD ITSLDNNHLE SIIQMLGLIS NQDLLKESIT VEKERIRSQA
201: SKSEEDMEQT EQLIELVLCI REHMLKTEFL EVAKGISIPP YFRCPLSTEL MLDPVIVASG QTFDRTSIKK WLDNGLAVCP RTRQVLTHQE LIPNYTVKAM
301: IASWLEANRI NLATNSCHQY DGGDASSMAN NMGSQDFNRT ESFRFSLRSS SLTSRSSLET GNGFEKLKIN VSASLCGESQ SKDLEIFELL SPGQSYTHSR
401: SESVCSVVSS VDYVPSVTHE TESILGNHQS SSEMSPKKNL ESSNNVNHEH SAAKTYECSV HDLDDSGTMT TSHTIKLVED LKSGSNKVKT AAAAEIRHLT
501: INSIENRVHI GRCGAITPLL SLLYSEEKLT QEHAVTALLN LSISELNKAM IVEVGAIEPL VHVLNTGNDR AKENSAASLF SLSVLQVNRE RIGQSNAAIQ
601: ALVNLLGKGT FRGKKDAASA LFNLSITHDN KARIVQAKAV KYLVELLDPD LEMVDKAVAL LANLSAVGEG RQAIVREGGI PLLVETVDLG SQRGKENAAS
701: VLLQLCLNSP KFCTLVLQEG AIPPLVALSQ SGTQRAKEKA QQLLSHFRNQ RDARMKKGRS

Arabidopsis Description

PUB3U-box domain-containing protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q8GWV5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.