Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 2
- extracellular 1
- golgi 1
- plasma membrane 1
- endoplasmic reticulum 1
- vacuole 1
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY04342 | Canola | cytosol | 97.49 | 93.39 |
| CDY24520 | Canola | cytosol | 79.94 | 37.83 |
| CDY54132 | Canola | cytosol | 79.0 | 37.06 |
| AT1G60190.1 | Thale cress | cytosol, plastid | 72.1 | 33.53 |
| CDX93411 | Canola | mitochondrion | 57.68 | 26.36 |
| CDY55050 | Canola | cytosol | 56.74 | 26.01 |
| KRH69547 | Soybean | cytosol, plastid | 42.95 | 19.21 |
| VIT_01s0026g00190.t01 | Wine grape | cytosol | 41.07 | 19.18 |
| Solyc05g005670.1.1 | Tomato | cytosol, mitochondrion | 38.56 | 17.96 |
| OQU80426 | Sorghum | endoplasmic reticulum, plasma membrane | 35.74 | 15.97 |
| Zm00001d050308_P001 | Maize | mitochondrion, plasma membrane | 34.17 | 15.71 |
| TraesCS2B01G499300.1 | Wheat | plasma membrane | 33.86 | 15.67 |
| TraesCS2A01G475600.1 | Wheat | cytosol, plasma membrane | 33.86 | 15.63 |
| Os09t0378700-00 | Rice | plasma membrane, plastid | 34.8 | 15.59 |
| HORVU5Hr1G059280.1 | Barley | cytosol, plasma membrane | 33.86 | 15.41 |
| TraesCS2D01G475600.1 | Wheat | cytosol, plasma membrane | 33.23 | 15.38 |
| KXG35540 | Sorghum | plasma membrane | 34.17 | 15.22 |
| Zm00001d020332_P001 | Maize | cytosol | 33.23 | 15.19 |
| TraesCS5D01G204700.1 | Wheat | cytosol, plasma membrane | 33.23 | 15.12 |
| Os08t0415600-00 | Rice | cytosol | 33.86 | 15.06 |
| TraesCS5A01G198800.1 | Wheat | cytosol, plasma membrane | 32.6 | 14.84 |
| TraesCS5B01G197400.1 | Wheat | cytosol, plasma membrane, plastid | 32.6 | 14.84 |
| PGSC0003DMT400095861 | Potato | cytosol, plasma membrane | 23.51 | 13.39 |
| CDY04747 | Canola | cytosol, golgi | 17.55 | 12.7 |
| CDX68380 | Canola | cytosol | 20.69 | 12.41 |
| CDX71307 | Canola | cytosol | 25.39 | 12.04 |
| CDY43686 | Canola | plastid | 24.76 | 11.95 |
| CDY31406 | Canola | cytosol | 25.08 | 11.87 |
| CDX94661 | Canola | plastid | 26.02 | 11.67 |
| CDY37666 | Canola | cytosol, plastid | 23.82 | 11.5 |
| CDY43332 | Canola | mitochondrion | 25.39 | 11.27 |
| CDX90186 | Canola | mitochondrion | 25.08 | 11.22 |
| CDY48332 | Canola | mitochondrion, plastid | 24.14 | 10.94 |
| GSMUA_Achr9P14560_001 | Banana | cytosol | 19.44 | 10.6 |
| PGSC0003DMT400090858 | Potato | cytosol, mitochondrion | 14.73 | 10.33 |
| CDX99816 | Canola | plastid | 23.2 | 10.22 |
| CDX86080 | Canola | cytosol | 20.69 | 10.06 |
| CDX68379 | Canola | cytosol | 20.69 | 10.03 |
| CDX99112 | Canola | cytosol | 20.06 | 9.77 |
| CDX77213 | Canola | cytosol | 19.12 | 9.49 |
| CDX74050 | Canola | cytosol | 13.17 | 9.21 |
| CDY21412 | Canola | cytosol, endoplasmic reticulum | 17.55 | 9.21 |
| CDY04746 | Canola | cytosol, endoplasmic reticulum | 17.55 | 9.2 |
| CDX96295 | Canola | cytosol, plasma membrane | 17.55 | 9.09 |
| CDY08002 | Canola | cytosol | 12.85 | 9.01 |
| CDX95193 | Canola | cytosol | 18.5 | 9.01 |
| CDY12497 | Canola | cytosol | 16.61 | 8.88 |
| CDY28059 | Canola | cytosol | 12.85 | 8.87 |
| CDY71737 | Canola | cytosol | 12.85 | 8.87 |
| CDY68037 | Canola | cytosol | 18.18 | 8.85 |
| CDY25764 | Canola | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 16.3 | 8.84 |
| CDX78273 | Canola | cytosol | 17.55 | 8.83 |
| CDY31736 | Canola | cytosol | 17.55 | 8.72 |
| CDX72769 | Canola | cytosol | 16.61 | 8.66 |
| CDY38931 | Canola | cytosol | 15.05 | 7.8 |
| GSMUA_Achr3P06160_001 | Banana | plastid | 13.79 | 7.76 |
| CDX78262 | Canola | cytosol | 16.93 | 7.69 |
| CDX73449 | Canola | cytosol | 16.3 | 7.39 |
| CDX81323 | Canola | cytosol, plastid | 16.61 | 7.33 |
| CDY18649 | Canola | cytosol, plastid | 16.3 | 7.3 |
| CDY02891 | Canola | cytosol | 16.61 | 7.19 |
| CDX76873 | Canola | cytosol, plastid | 16.61 | 7.1 |
| CDY64696 | Canola | cytosol, extracellular, mitochondrion, plastid | 15.99 | 6.91 |
| CDY12838 | Canola | cytosol | 14.11 | 6.44 |
| CDY57440 | Canola | cytosol | 13.17 | 6.37 |
| CDX73439 | Canola | plastid | 17.55 | 6.22 |
| CDY68352 | Canola | cytosol | 8.46 | 5.92 |
| CDY38506 | Canola | cytosol | 7.84 | 5.48 |
| CDY46092 | Canola | endoplasmic reticulum, golgi, plasma membrane, plastid | 16.93 | 5.23 |
| CDY51235 | Canola | extracellular, golgi | 8.46 | 5.2 |
| CDX70810 | Canola | cytosol | 7.52 | 5.08 |
| CDY09688 | Canola | cytosol | 2.82 | 1.98 |
| CDX90518 | Canola | plastid | 2.51 | 1.76 |
| CDX70805 | Canola | cytosol | 7.84 | 1.62 |
| CDY51234 | Canola | cytosol | 7.84 | 1.51 |
| CDX91947 | Canola | plastid | 0.63 | 0.57 |
| CDY32692 | Canola | peroxisome | 0.63 | 0.57 |
| CDX74298 | Canola | plastid | 0.63 | 0.56 |
| CDY02828 | Canola | cytosol | 0.63 | 0.56 |
| CDY28679 | Canola | cytosol | 0.0 | 0.0 |
| PGSC0003DMT400082693 | Potato | cytosol | 0.0 | 0.0 |
Protein Annotations
| Gene3D:3.30.40.10 | MapMan:35.1 | GO:A0A078EUS7 | EnsemblPlants:CDY04344 | ProteinID:CDY04344 | ProteinID:CDY04344.1 |
| GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004842 | GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009987 | GO:GO:0016567 | GO:GO:0016740 | GO:GO:0019538 | EnsemblPlantsGene:GSBRNA2T00118223001 | InterPro:IPR003613 |
| InterPro:IPR013083 | PFAM:PF04564 | PFscan:PS51698 | PANTHER:PTHR23315 | PANTHER:PTHR23315:SF116 | SMART:SM00504 |
| SUPFAM:SSF57850 | UniPathway:UPA00143 | UniParc:UPI0004EE471F | InterPro:Ubox_domain | InterPro:Znf_RING/FYVE/PHD | SEG:seg |
Description
BnaC04g18490D
Coordinates
chrLK031952:+:152177..153238
Molecular Weight (calculated)
36983.8 Da
IEP (calculated)
8.475
GRAVY (calculated)
-0.270
Length
319 amino acids
Sequence
(BLAST)
(BLAST)
001: MSDRRILTFP AVHPCESISI TTLINSLLEI AGKILSFKSK HFSTSNGNAK ETFRHIHNLM VIFQEIRVRK LPACRSFPRS AILSLSELHV IFRKLKFLLQ
101: DCTRVGAKLY MLINSDQVSS HFQTRKYEAR PDRDDKRAID SVYWIFNLFE NRIKPNQDEV LRVLDHIGVR TWSYCVKEIG FLREEIRVET KDKNEIELLS
201: SLIGFICYCR CVILERIDED EDKKEEEEEY VIIRGLNVDD LRCPISLEIK NDPVVLETGH TYDRSSITKW FSAGNITCPK TGKTLVSTVL VGNVSVKQVV
301: HSYFEQEIDH KSKKKKLSV
101: DCTRVGAKLY MLINSDQVSS HFQTRKYEAR PDRDDKRAID SVYWIFNLFE NRIKPNQDEV LRVLDHIGVR TWSYCVKEIG FLREEIRVET KDKNEIELLS
201: SLIGFICYCR CVILERIDED EDKKEEEEEY VIIRGLNVDD LRCPISLEIK NDPVVLETGH TYDRSSITKW FSAGNITCPK TGKTLVSTVL VGNVSVKQVV
301: HSYFEQEIDH KSKKKKLSV
001: MIHTKTGSGR RILTFPTVEP SESISIVTLL DSLIQLAGDI LTFKSKHFST NKQSFRETLR RIQNLLVVFE EIRIRIRNSR RYFHDSAAAS SLKEIHVGFQ
101: KLKFLLEDCT RDGARLCMMM NSDQVSDHLR VLTRSISTSL SAFPVASVDL TTEVNELIDL VVRQARKYGV QPETNDKRAV SSINRILALF VNRVVPDPDE
201: INRILDHVGI RKWGDCVKEI NFLGEEIDAE RLDEKKKKSS DQVELLSSLM GFICYCRCII LGRIERDDHH NHHEDGIKKD HDLIRGLKVE DLLCPISLEI
301: MTDPVVIETG HTYDRSSITK WFGSGNITCP ITGKILTSTE LVDNVSVRQV IRKHCKTNGI VLAGISRRRK SHDDVVPESL AAKGAGKLIA KFLTSELING
401: GEEMIYRAVR EIRVQTKTSS FNRSCLVKAG AVTPLLKLLS SVDIRIQENA MAGILNLSKH VTGKSKIAGE GLKILVEILN EGAKTETRLY SASALFYLSS
501: VEDYSRLIGE NPDAIPGLMN IVKGDDYGDS AKRSALLAVM GLLMQSDNHW RVLAAGAVPI LLDLLRSGEI SGGLTADCLA TLAKLAEYPD GTIGVIRRGG
601: LKLAVKILSS SEDSPVAVKQ HCVGLILNLC LNGGRDVVGV LVKNSLVMGS LYTVLSNGEY GGSKKASALI RMIHEFQERK TGSVEPNLQR GRFVHAW
101: KLKFLLEDCT RDGARLCMMM NSDQVSDHLR VLTRSISTSL SAFPVASVDL TTEVNELIDL VVRQARKYGV QPETNDKRAV SSINRILALF VNRVVPDPDE
201: INRILDHVGI RKWGDCVKEI NFLGEEIDAE RLDEKKKKSS DQVELLSSLM GFICYCRCII LGRIERDDHH NHHEDGIKKD HDLIRGLKVE DLLCPISLEI
301: MTDPVVIETG HTYDRSSITK WFGSGNITCP ITGKILTSTE LVDNVSVRQV IRKHCKTNGI VLAGISRRRK SHDDVVPESL AAKGAGKLIA KFLTSELING
401: GEEMIYRAVR EIRVQTKTSS FNRSCLVKAG AVTPLLKLLS SVDIRIQENA MAGILNLSKH VTGKSKIAGE GLKILVEILN EGAKTETRLY SASALFYLSS
501: VEDYSRLIGE NPDAIPGLMN IVKGDDYGDS AKRSALLAVM GLLMQSDNHW RVLAAGAVPI LLDLLRSGEI SGGLTADCLA TLAKLAEYPD GTIGVIRRGG
601: LKLAVKILSS SEDSPVAVKQ HCVGLILNLC LNGGRDVVGV LVKNSLVMGS LYTVLSNGEY GGSKKASALI RMIHEFQERK TGSVEPNLQR GRFVHAW
Arabidopsis Description
PUB18U-box domain-containing protein 18 [Source:UniProtKB/Swiss-Prot;Acc:Q9XIJ5]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.