Factsheet for Zm00001d050308_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plasma membrane

Predictor Summary:

plastid 1
cytosol 1
mitochondrion 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 2
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion, plasma membrane
Any Predictor:	cytosol, mitochondrion, plastid, secretory
iPSORT:	plastid
MultiLoc:	cytosol
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU80426	Sorghum	endoplasmic reticulum, plasma membrane	87.46	85.01
TraesCS2A01G475600.1	Wheat	cytosol, plasma membrane	68.44	68.74
TraesCS2D01G475600.1	Wheat	cytosol, plasma membrane	67.72	68.21
TraesCS2B01G499300.1	Wheat	plasma membrane	67.72	68.21
Os08t0415600-00	Rice	cytosol	67.72	65.55
Zm00001d020332_P001	Maize	cytosol	62.39	62.03
GSMUA_Achr9P14560_001	Banana	cytosol	39.91	47.35
GSMUA_Achr3P06160_001	Banana	plastid	35.16	43.03
VIT_01s0026g00190.t01	Wine grape	cytosol	38.62	39.24
VIT_17s0000g08080.t01	Wine grape	cytosol, mitochondrion	38.33	39.18
PGSC0003DMT400062931	Potato	cytosol	38.33	39.0
KRH03317	Soybean	cytosol, plastid	37.75	38.76
Solyc03g114160.1.1	Tomato	cytosol	37.75	38.42
KRH69547	Soybean	cytosol, plastid	38.62	37.59
CDY55050	Canola	cytosol	37.46	37.36
PGSC0003DMT400082693	Potato	cytosol	13.11	37.3
PGSC0003DMT400095861	Potato	cytosol, plasma membrane	29.97	37.14
Bra019924.1-P	Field mustard	mitochondrion	36.89	36.83
CDX93411	Canola	mitochondrion	37.03	36.82
KRH54418	Soybean	cytosol, plastid	35.59	36.16
AT1G10560.1	Thale cress	cytosol	35.73	35.58
Solyc05g005670.1.1	Tomato	cytosol, mitochondrion	35.01	35.47
AT1G60190.1	Thale cress	cytosol, plastid	34.73	35.13
PGSC0003DMT400090858	Potato	cytosol, mitochondrion	22.91	34.95
CDY54132	Canola	cytosol	33.57	34.26
CDY04344	Canola	cytosol	15.71	34.17
CDY24520	Canola	cytosol	33.0	33.98
Bra031521.1-P	Field mustard	cytosol	32.85	33.68
CDY04342	Canola	cytosol	15.42	32.13
Zm00001d043043_P001	Maize	cytosol	27.67	28.96
Zm00001d053544_P001	Maize	mitochondrion, plastid	29.39	28.94
Zm00001d012494_P001	Maize	cytosol	27.38	28.66
Zm00001d038471_P001	Maize	cytosol, plasma membrane, plastid	26.8	27.76
Zm00001d016225_P001	Maize	plastid	28.96	27.57
Zm00001d045632_P004	Maize	cytosol, mitochondrion	24.64	27.14
Zm00001d041548_P002	Maize	cytosol	26.08	26.93
Zm00001d030732_P001	Maize	cytosol	25.5	26.62
Zm00001d016501_P001	Maize	cytosol	16.86	25.16
Zm00001d014845_P001	Maize	cytosol	23.2	25.12
Zm00001d000381_P001	Maize	cytosol	22.77	24.76
Zm00001d031263_P001	Maize	cytosol	22.77	24.5
Zm00001d028623_P001	Maize	cytosol	24.78	23.69
Zm00001d006726_P001	Maize	cytosol	12.25	23.61
Zm00001d021978_P001	Maize	cytosol	12.1	23.2
Zm00001d021951_P001	Maize	plastid	14.7	21.94
Zm00001d006705_P001	Maize	plastid	14.27	21.34
Zm00001d035040_P007	Maize	mitochondrion	22.33	17.78
Zm00001d049708_P007	Maize	cytosol	21.33	16.78
Zm00001d042608_P002	Maize	cytosol	21.47	16.11
Zm00001d003967_P001	Maize	plastid	10.23	15.78

Protein Annotations

Gene3D:1.25.10.10	EntrezGene:103653432	MapMan:19.2.2.1.5.2.1	Gene3D:3.30.40.10	UniProt:A0A1D6Q0X7	ProteinID:AQK52288.1
InterPro:ARM-like	InterPro:ARM-type_fold	InterPro:Armadillo	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842
GO:GO:0005488	GO:GO:0005515	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	InterPro:IPR000225	InterPro:IPR003613	InterPro:IPR011989
InterPro:IPR013083	PFAM:PF00514	PFAM:PF04564	PFscan:PS50176	PFscan:PS51698	PANTHER:PTHR23315
PANTHER:PTHR23315:SF229	SMART:SM00185	SMART:SM00504	SUPFAM:SSF48371	SUPFAM:SSF57850	UniParc:UPI0004DEAC35
InterPro:Ubox_domain	EnsemblPlantsGene:Zm00001d050308	EnsemblPlants:Zm00001d050308_P001	EnsemblPlants:Zm00001d050308_T001	InterPro:Znf_RING/FYVE/PHD	SEG:seg

Description

U-box domain-containing protein 18

Coordinates

chr4:+:80306469..80308553

Molecular Weight (calculated)

73545.0 Da

IEP (calculated)

6.878

GRAVY (calculated)

0.156

Length

694 amino acids

Sequence
(BLAST)

001: MAPRPRRRML ALPAVYPCEA IEPAPLLASL ISLAADIAGL RAADVDALPA LRGAAREAVR IVGLVLVLLD GIVRDAPAPD QAAVLGLSEL HVALQKLRLL
101: LADCARKGAR LWVLMNAELS ASELRVLLGS VATAMDALPG DVVRASADAE ELAGLVSRQA WRAASRLRPD PEDDRAARAV RSVLARFASG VSPDAEDARL
201: VLACVGVDTW LDCSEEAAFL EAELLERLET GSDSDNDNDL VLIGGLMAFL LYCRVVLFDR IDDSGKAATA NRLPPRWAAG VNLNLEALQC PITLELMTDP
301: VTVATGQTYD RASIKKWIKS GCRTCPVTGE RLRSAELVPN VAARAVIEQL LLSRGVPLHE PSSKHRCAVD KTATPFGAAA AGGVRLSAAF LMARLSSGAP
401: EDQKKATYEA RKLSKRNVFY RACLVEADAV PWLLHLLSST DASVQDNSVA GLLNLSKHPA GRRALVEAGG LGLVVDAVNV AAKVEARQNA AAILFYLSSN
501: LEYCEEISRM PEAVPTLVRL AREGAYRGRK NALVSLYGLL QCADAHGRAV SAGAVDALAG LLGSSAGDDD LALDAVALLA RLAEQPAGAR AVMESSELVT
601: RLVDLFGEAA SRSAKEHCVA LLALLGRHCG DKVLTLLGKL PGLMPALYAV IADGTPQAGK KARWLVNEIH RHYEQRQTPA SAPAPTTGDR VIHV

Best Arabidopsis Sequence Match ( AT1G10560.1 )
(BLAST)

001: MIHTKTGSGR RILTFPTVEP SESISIVTLL DSLIQLAGDI LTFKSKHFST NKQSFRETLR RIQNLLVVFE EIRIRIRNSR RYFHDSAAAS SLKEIHVGFQ
101: KLKFLLEDCT RDGARLCMMM NSDQVSDHLR VLTRSISTSL SAFPVASVDL TTEVNELIDL VVRQARKYGV QPETNDKRAV SSINRILALF VNRVVPDPDE
201: INRILDHVGI RKWGDCVKEI NFLGEEIDAE RLDEKKKKSS DQVELLSSLM GFICYCRCII LGRIERDDHH NHHEDGIKKD HDLIRGLKVE DLLCPISLEI
301: MTDPVVIETG HTYDRSSITK WFGSGNITCP ITGKILTSTE LVDNVSVRQV IRKHCKTNGI VLAGISRRRK SHDDVVPESL AAKGAGKLIA KFLTSELING
401: GEEMIYRAVR EIRVQTKTSS FNRSCLVKAG AVTPLLKLLS SVDIRIQENA MAGILNLSKH VTGKSKIAGE GLKILVEILN EGAKTETRLY SASALFYLSS
501: VEDYSRLIGE NPDAIPGLMN IVKGDDYGDS AKRSALLAVM GLLMQSDNHW RVLAAGAVPI LLDLLRSGEI SGGLTADCLA TLAKLAEYPD GTIGVIRRGG
601: LKLAVKILSS SEDSPVAVKQ HCVGLILNLC LNGGRDVVGV LVKNSLVMGS LYTVLSNGEY GGSKKASALI RMIHEFQERK TGSVEPNLQR GRFVHAW

Arabidopsis Description

PUB18U-box domain-containing protein 18 [Source:UniProtKB/Swiss-Prot;Acc:Q9XIJ5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.