Factsheet for PGSC0003DMT400090858

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

plastid 1
mitochondrion 4
cytosol 2
nucleus 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400082693	Potato	cytosol	53.63	100.0
Solyc05g005670.1.1	Tomato	cytosol, mitochondrion	95.82	63.65
PGSC0003DMT400095861	Potato	cytosol, plasma membrane	71.65	58.21
VIT_01s0026g00190.t01	Wine grape	cytosol	56.48	37.63
PGSC0003DMT400062931	Potato	cytosol	47.91	31.96
GSMUA_Achr3P06160_001	Banana	plastid	39.34	31.57
GSMUA_Achr9P14560_001	Banana	cytosol	39.56	30.77
KRH69547	Soybean	cytosol, plastid	48.13	30.72
CDX93411	Canola	mitochondrion	45.05	29.37
Bra019924.1-P	Field mustard	mitochondrion	44.84	29.35
CDY55050	Canola	cytosol	44.4	29.02
AT1G10560.1	Thale cress	cytosol	43.08	28.12
AT1G60190.1	Thale cress	cytosol, plastid	41.76	27.7
CDY24520	Canola	cytosol	40.66	27.45
Bra031521.1-P	Field mustard	cytosol	40.66	27.33
CDY54132	Canola	cytosol	40.22	26.91
TraesCS2D01G475600.1	Wheat	cytosol, plasma membrane	35.6	23.51
Os09t0378700-00	Rice	plasma membrane, plastid	36.7	23.46
TraesCS2A01G475600.1	Wheat	cytosol, plasma membrane	35.6	23.44
TraesCS2B01G499300.1	Wheat	plasma membrane	34.95	23.08
Zm00001d050308_P001	Maize	mitochondrion, plasma membrane	34.95	22.91
PGSC0003DMT400027542	Potato	cytosol	17.8	22.75
TraesCS5B01G197400.1	Wheat	cytosol, plasma membrane, plastid	34.95	22.68
TraesCS5A01G198800.1	Wheat	cytosol, plasma membrane	34.95	22.68
TraesCS5D01G204700.1	Wheat	cytosol, plasma membrane	34.73	22.54
HORVU5Hr1G059280.1	Barley	cytosol, plasma membrane	34.51	22.4
PGSC0003DMT400030161	Potato	cytosol	17.36	22.07
Zm00001d020332_P001	Maize	cytosol	33.85	22.06
KXG35540	Sorghum	plasma membrane	34.29	21.79
OQU80426	Sorghum	endoplasmic reticulum, plasma membrane	33.41	21.29
Os08t0415600-00	Rice	cytosol	31.65	20.08
PGSC0003DMT400019235	Potato	cytosol	27.25	19.87
PGSC0003DMT400034564	Potato	nucleus, plastid	19.78	19.65
PGSC0003DMT400077205	Potato	cytosol	29.23	19.59
PGSC0003DMT400060674	Potato	plastid	19.34	19.51
PGSC0003DMT400078166	Potato	cytosol	27.47	18.91
PGSC0003DMT400001049	Potato	cytosol	27.47	18.83
PGSC0003DMT400073254	Potato	cytosol	28.79	18.09
PGSC0003DMT400015349	Potato	cytosol	25.27	17.77
PGSC0003DMT400027406	Potato	cytosol	10.11	17.23
PGSC0003DMT400016998	Potato	cytosol	16.92	17.15
PGSC0003DMT400075612	Potato	cytosol	23.74	16.74
PGSC0003DMT400025648	Potato	cytosol	23.52	16.49
PGSC0003DMT400078473	Potato	cytosol	22.64	15.85
PGSC0003DMT400071349	Potato	plastid	23.74	15.61
PGSC0003DMT400039084	Potato	cytosol	14.95	15.35
CDY04344	Canola	cytosol	10.33	14.73
CDY04342	Canola	cytosol	10.77	14.71
PGSC0003DMT400011486	Potato	cytosol	11.21	14.29
PGSC0003DMT400026700	Potato	cytosol	23.3	13.62
PGSC0003DMT400046295	Potato	cytosol	22.42	12.42

Protein Annotations

EnsemblPlants:PGSC0003DMT400090858	EnsemblPlantsGene:PGSC0003DMG400040429	Gene3D:1.25.10.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:ARM-like	InterPro:ARM-type_fold	InterPro:Armadillo	InterPro:IPR000225	InterPro:IPR011989	PANTHER:PTHR23315
PANTHER:PTHR23315:SF116	PFAM:PF00514	PFscan:PS50176	PGSC:PGSC0003DMG400040429	SEG:seg	SMART:SM00185
SUPFAM:SSF48371	UniParc:UPI000295FE06	UniProt:M1DLC4	MapMan:35.1	:	:

Description

Spotted leaf protein [Source:PGSC_GENE;Acc:PGSC0003DMG400040429]

Coordinates

chr5:+:8094887..8096351

Molecular Weight (calculated)

50431.8 Da

IEP (calculated)

7.895

GRAVY (calculated)

0.178

Length

455 amino acids

Sequence
(BLAST)

001: MINKSNEFIR RILNFPAIRP GETVCFSSLV SSLIQLGQTI CEYKSRTFYT NKKNVRNSIR LIEDILIVLK EIPNGVSRFA NSSIVSLSEI HFIFHKFHFL
101: LDDCSREDSR IWILAKSEDV SCQFQMLARA VAVALDALPL KEMDVSVDGQ EVVEFVKNQA VKLKFEVEMD DGLRLLTKTS IFNRSCLVEA GVIPPLLNLV
201: TSRDSSCQEN SMATLLNLSK NSKCKSTIVG NGGLFLILDV LKGGLKMEAR QHAAGTLFYL TSVEEYRKMM GENPEFIPSL LELLRNGTDR GKKNALVTIF
301: GLLMRPENHW RVIAAGLVPL VVNLLKSFER EDLITDSLAV LTTLSERLDG AMAVLYAGAL PIIVNVLSSC NSRASKEYCV SLLLALCING GADAVPVLVK
401: NSSLMGPLYS LLAEGNSKAS KKASTLIRIL HEYNEKTSSG LITPVFIEDQ FINVW

Best Arabidopsis Sequence Match ( AT1G10560.1 )
(BLAST)

001: MIHTKTGSGR RILTFPTVEP SESISIVTLL DSLIQLAGDI LTFKSKHFST NKQSFRETLR RIQNLLVVFE EIRIRIRNSR RYFHDSAAAS SLKEIHVGFQ
101: KLKFLLEDCT RDGARLCMMM NSDQVSDHLR VLTRSISTSL SAFPVASVDL TTEVNELIDL VVRQARKYGV QPETNDKRAV SSINRILALF VNRVVPDPDE
201: INRILDHVGI RKWGDCVKEI NFLGEEIDAE RLDEKKKKSS DQVELLSSLM GFICYCRCII LGRIERDDHH NHHEDGIKKD HDLIRGLKVE DLLCPISLEI
301: MTDPVVIETG HTYDRSSITK WFGSGNITCP ITGKILTSTE LVDNVSVRQV IRKHCKTNGI VLAGISRRRK SHDDVVPESL AAKGAGKLIA KFLTSELING
401: GEEMIYRAVR EIRVQTKTSS FNRSCLVKAG AVTPLLKLLS SVDIRIQENA MAGILNLSKH VTGKSKIAGE GLKILVEILN EGAKTETRLY SASALFYLSS
501: VEDYSRLIGE NPDAIPGLMN IVKGDDYGDS AKRSALLAVM GLLMQSDNHW RVLAAGAVPI LLDLLRSGEI SGGLTADCLA TLAKLAEYPD GTIGVIRRGG
601: LKLAVKILSS SEDSPVAVKQ HCVGLILNLC LNGGRDVVGV LVKNSLVMGS LYTVLSNGEY GGSKKASALI RMIHEFQERK TGSVEPNLQR GRFVHAW

Arabidopsis Description

PUB18U-box domain-containing protein 18 [Source:UniProtKB/Swiss-Prot;Acc:Q9XIJ5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.