Factsheet for PGSC0003DMT400019235

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plasma membrane
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400008728
PGSC0003DMT400009439
PGSC0003DMT400018188
PGSC0003DMT400019235
PGSC0003DMT400019944
PGSC0003DMT400033356
PGSC0003DMT400054750
PGSC0003DMT400058186
PGSC0003DMT400063189
PGSC0003DMT400075050
PGSC0003DMT400076363
PGSC0003DMT400080145
PGSC0003DMT400080166

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G54850.1	PGSC0003DMT400019944	AT1G04130.1	21798944
AT3G54850.1	PGSC0003DMT400018188	AT1G53510.1	21798944
AT3G54850.1	PGSC0003DMT400054750	AT1G53510.1	21798944
AT3G54850.1	PGSC0003DMT400008728	AT1G69690.1	21798944
AT3G54850.1	PGSC0003DMT400063189	AT3G48150.1	21798944
AT3G54850.1	PGSC0003DMT400019235	AT3G54850.1	21798944
AT3G54850.1	PGSC0003DMT400009439	AT4G36110.1	21798944
AT3G54850.1	PGSC0003DMT400058186	AT4G36110.1	21798944
AT3G54850.1	PGSC0003DMT400075050	AT4G36110.1	21798944
AT3G54850.1	PGSC0003DMT400080145	AT4G39470.1	21798944
AT3G54850.1	PGSC0003DMT400080166	AT4G39470.1	21798944
AT3G54850.1	PGSC0003DMT400033356	AT5G58950.1	21798944
AT3G54850.1	PGSC0003DMT400076363	AT5G58950.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc11g008390.1.1	Tomato	cytosol	97.76	97.76
KRH04403	Soybean	mitochondrion	44.07	75.97
VIT_13s0019g04710.t01	Wine grape	cytosol	76.44	75.96
KRG91959	Soybean	cytosol	72.28	71.47
KRH34817	Soybean	cytosol	71.96	71.04
Bra007105.1-P	Field mustard	cytosol	65.54	64.51
CDX78273	Canola	cytosol	65.22	64.2
AT3G54850.1	Thale cress	cytosol	64.74	63.92
TraesCS7A01G001900.1	Wheat	cytosol	54.01	63.58
HORVU7Hr1G000780.1	Barley	cytosol	58.81	62.2
EER87680	Sorghum	cytosol	58.65	60.9
TraesCS7D01G001600.2	Wheat	cytosol, plastid	58.65	60.8
Os06t0102700-01	Rice	plasma membrane	58.49	60.43
GSMUA_Achr3P00280_001	Banana	cytosol	57.05	59.04
Zm00001d045632_P004	Maize	cytosol, mitochondrion	57.85	57.3
TraesCS4A01G498700.1	Wheat	plastid	57.53	56.71
GSMUA_Achr1P24290_001	Banana	cytosol	55.13	56.3
PGSC0003DMT400001049	Potato	cytosol	56.73	53.31
PGSC0003DMT400078166	Potato	cytosol	55.29	52.19
CDX73439	Canola	plastid	65.06	45.06
PGSC0003DMT400015349	Potato	cytosol	45.51	43.89
PGSC0003DMT400078473	Potato	cytosol	44.87	43.08
PGSC0003DMT400025648	Potato	cytosol	41.35	39.75
PGSC0003DMT400075612	Potato	cytosol	40.38	39.07
PGSC0003DMT400016998	Potato	cytosol	26.44	36.75
PGSC0003DMT400027542	Potato	cytosol	20.51	35.96
PGSC0003DMT400030161	Potato	cytosol	20.51	35.75
PGSC0003DMT400077205	Potato	cytosol	37.02	34.02
PGSC0003DMT400082693	Potato	cytosol	12.5	31.97
PGSC0003DMT400011486	Potato	cytosol	18.27	31.93
PGSC0003DMT400073254	Potato	cytosol	35.58	30.66
PGSC0003DMT400034564	Potato	nucleus, plastid	21.63	29.48
PGSC0003DMT400095861	Potato	cytosol, plasma membrane	26.44	29.46
PGSC0003DMT400071349	Potato	plastid	32.53	29.34
PGSC0003DMT400039084	Potato	cytosol	20.67	29.12
PGSC0003DMT400060674	Potato	plastid	20.99	29.05
PGSC0003DMT400026700	Potato	cytosol	36.06	28.92
PGSC0003DMT400046295	Potato	cytosol	37.82	28.75
PGSC0003DMT400062931	Potato	cytosol	31.41	28.74
PGSC0003DMT400027406	Potato	cytosol	12.18	28.46
PGSC0003DMT400090858	Potato	cytosol, mitochondrion	19.87	27.25

Protein Annotations

Gene3D:1.25.10.10	EntrezGene:102600882	MapMan:19.2.2.1.5.2.1	Gene3D:3.30.40.10	InterPro:ARM-like	InterPro:ARM-type_fold
InterPro:Armadillo	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005102	GO:GO:0005488
GO:GO:0005515	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016567
GO:GO:0016740	GO:GO:0019538	GO:GO:0070696	InterPro:IPR000225	InterPro:IPR003613	InterPro:IPR011989
InterPro:IPR013083	UniProt:M1ABT1	PFAM:PF00514	PFAM:PF04564	EnsemblPlantsGene:PGSC0003DMG400007435	PGSC:PGSC0003DMG400007435
EnsemblPlants:PGSC0003DMT400019235	PFscan:PS50176	PFscan:PS51698	PANTHER:PTHR23315	PANTHER:PTHR23315:SF111	SMART:SM00185
SMART:SM00504	SUPFAM:SSF48371	SUPFAM:SSF57850	UniParc:UPI0002960048	InterPro:Ubox_domain	RefSeq:XP_006361678.1
RefSeq:XP_015170914.1	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:

Description

Armadillo/beta-catenin repeat family protein [Source:PGSC_GENE;Acc:PGSC0003DMG400007435]

Coordinates

chr11:+:3642583..3646548

Molecular Weight (calculated)

68014.1 Da

IEP (calculated)

5.291

GRAVY (calculated)

-0.196

Length

624 amino acids

Sequence
(BLAST)

001: MGHQKEDLIN ELTELIDGVS GLPECRSVSK RMYSNLVRRV KLLSPLVEDL KDSDGVEVGD DVVHGLELLR IALISGLELL KSVNEGSKIL QALQIENISS
101: RFLNVTEQIE DALSDIPYNK LDLSEEVQEQ IELVHAQFKR AKGKMESPDE QLEKDLAMAQ REQYPDPMIF KRLSEKLHLR TINDLKKESL AIHDMVISSG
201: GDPEECFETI AYLLRKLKDC AMTENPELDA LEGDKSLIKH RSPVIPDDFR CPISLELMKD PVIVSTGQTY ERSCIQKWLD AGHKTCPKTQ QTLLHTALTP
301: NYVLKSLIAL WCENNGVELP KKQGTCRNKR SGAGGSDCDR AAIDALLQKL ANGNPEQQRA AAGELRLLAK RNADNRVCIA GAGAIPLLVE LLSSSDSRTQ
401: EHAVTALLNL SINEGNKGTI VNAGAIPDIV DVLRNGSMEA RENAAATLFS LSVVDENKVA IGAAGAIPAL IDLLCHGTPR GKKDAATAIF NLSIYQGNKV
501: RAVRAGIVPP LVRLLKDPGG GMMDEALAIL AILASHQEGK AAIAQSEPLP VLVEVIRTGS PRNRENAAAI LWSLCTGDVQ SLKIVRELGV EEVLKELSEN
601: GTDRAKRKAG SVLELLQRVD PVES

Best Arabidopsis Sequence Match ( AT3G54850.1 )
(BLAST)

001: MGLTNCCSHE ELMSRLVDSV KEISGFSSSR GFIGKIQGDL VRRITLLSPF FEELIDVNVE LKKDQITGFE AMRIALDSSL ELFRSVNGGS KLFQLFDRDS
101: LVEKFRDMTV EIEAALSQIP YEKIEVSEEV REQVQLLHFQ FKRAKERWEE SDLQLSHDLA MAENVMDPDP IILKRLSQEL QLTTIDELKK ESHAIHEYFL
201: SYDGDPDDCF ERMSSLLKNL VDFVTMESSD PDPSTGSRIV SRHRSPVIPE YFRCPISLEL MKDPVIVSTG QTYERSSIQK WLDAGHKTCP KSQETLLHAG
301: LTPNYVLKSL IALWCESNGI ELPQNQGSCR TTKIGGSSSS DCDRTFVLSL LEKLANGTTE QQRAAAGELR LLAKRNVDNR VCIAEAGAIP LLVELLSSPD
401: PRTQEHSVTA LLNLSINEGN KGAIVDAGAI TDIVEVLKNG SMEARENAAA TLFSLSVIDE NKVAIGAAGA IQALISLLEE GTRRGKKDAA TAIFNLCIYQ
501: GNKSRAVKGG IVDPLTRLLK DAGGGMVDEA LAILAILSTN QEGKTAIAEA ESIPVLVEII RTGSPRNREN AAAILWYLCI GNIERLNVAR EVGADVALKE
601: LTENGTDRAK RKAASLLELI QQTEGVAVTT VP

Arabidopsis Description

PUB14U-box domain-containing protein 14 [Source:UniProtKB/Swiss-Prot;Acc:Q8VZ40]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.