Factsheet for PGSC0003DMT400080166

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400080145	Potato	cytosol	38.26	98.51
Solyc04g051660.2.1	Tomato	plastid	95.65	95.65
VIT_07s0031g01760.t01	Wine grape	cytosol	48.12	65.87
KRH64138	Soybean	plastid	49.86	48.31
CDX72699	Canola	plastid	47.83	48.1
CDY53183	Canola	plastid	47.54	47.81
Bra033620.1-P	Field mustard	plastid	46.96	47.23
KRH53808	Soybean	plastid	48.12	46.63
AT4G39470.1	Thale cress	plastid	45.8	46.33
GSMUA_Achr6P00760_001	Banana	plastid	45.22	43.7
OQU77561	Sorghum	plastid	39.42	39.42
TraesCS1D01G121600.1	Wheat	plastid	42.61	38.68
TraesCS1A01G120800.1	Wheat	plastid	42.03	38.16
Os05t0182100-01	Rice	plastid	42.61	37.12
Zm00001d037616_P001	Maize	plastid	39.13	36.39
HORVU1Hr1G027550.1	Barley	plastid	42.32	35.27
TraesCS1B01G140100.1	Wheat	plastid	42.32	35.1
PGSC0003DMT400086906	Potato	plastid	25.8	27.81
PGSC0003DMT400028724	Potato	plastid	26.09	26.16
PGSC0003DMT400061430	Potato	plastid	26.38	26.0
PGSC0003DMT400091279	Potato	plastid	22.03	24.52

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:102593671	MapMan:35.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR011990	InterPro:IPR013026	InterPro:IPR019734	UniProt:M1D334	PFAM:PF14559	EnsemblPlantsGene:PGSC0003DMG400031205
PGSC:PGSC0003DMG400031205	EnsemblPlants:PGSC0003DMT400080166	PFscan:PS50005	PFscan:PS50293	PANTHER:PTHR26312	PANTHER:PTHR26312:SF67
SMART:SM00028	SUPFAM:SSF48452	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	InterPro:TPR_repeat	UniParc:UPI000295E376
RefSeq:XP_006367386.1	RefSeq:XP_006367387.1	:	:	:	:

Description

Chloroplast lumen common family protein [Source:PGSC_GENE;Acc:PGSC0003DMG400031205]

Coordinates

chr4:+:54673789..54678343

Molecular Weight (calculated)

39697.0 Da

IEP (calculated)

9.812

GRAVY (calculated)

-0.282

Length

345 amino acids

Sequence
(BLAST)

001: MVSSIATKIP LCLHSSTLNH NSNVVHPISL KTLFLPPLYS PKTLTTLYPK LQAASKSQNS AILTCSWKPQ KGISKFFSEK IVFLLVGSFL FMGIRAKRVF
101: SLPQPVQGSS VVETQEGDSE EEVMCMKLLE KNPRDVDALK TIVNVKMRKG KTKEALKYVE KLIEVQPREM EWRLLEALCY EMMGQLSKAK RLFKEILKQK
201: PLLLRALHGL AMVMHKNFEG PTVFEMLNGA LEVARQEKRV NEERNIKILV AQMHVVKGEL EEALQKFKLL VQENPRDFRP YLCQGIVYSL LDKKKEADEQ
301: FEIYRSLVPK EFPQRGFLDD VVLAAKTETR EQLEKEFKNE FSYKT

Best Arabidopsis Sequence Match ( AT4G39470.1 )
(BLAST)

001: MCSIGVTALC SPAKFHHRRE QSLIFTPTHL RNPNGFQFRW RKSRPFAPRL AQPDNFAPPL PLIRSSTSLL SSKDFVQMLA RKAAILLVGS FVFLGFCSSK
101: PALALPTATV VSQAELEDEK MFEKLLENEP ENMEAMKAVV YKKMRRGKNE DAVKYVEKLM KLEPHEVEWK LLEALCYETM GELSKAKRLY KDILKEQPLL
201: IRALHGLAMV MHKTHDTSVF DMLIEAMEVA RQGNRVTEER NIQVLIGQMH IVEGQFEEGL KIFQQMVNDN PRDFRPYLCQ GIVYSLMDKK EEAAQQFEIY
301: WSLVPGEFPQ KGFLDDVALA AQAKSRERLQ NTFKAKFTQG R

Arabidopsis Description

AT4g39470/F23K16_100 [Source:UniProtKB/TrEMBL;Acc:Q94A56]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.