Factsheet for Bra033620.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
plasma membrane 1
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY53183	Canola	plastid	98.54	98.54
AT4G39470.1	Thale cress	plastid	80.76	81.23
PGSC0003DMT400080145	Potato	cytosol	25.07	64.18
VIT_07s0031g01760.t01	Wine grape	cytosol	42.57	57.94
PGSC0003DMT400080166	Potato	plastid	47.23	46.96
Solyc04g051660.2.1	Tomato	plastid	46.36	46.09
KRH53808	Soybean	plastid	46.94	45.22
KRH64138	Soybean	plastid	46.94	45.22
GSMUA_Achr6P00760_001	Banana	plastid	41.98	40.34
Bra017190.1-P	Field mustard	cytosol	20.12	34.85
OQU77561	Sorghum	plastid	34.11	33.91
TraesCS1A01G120800.1	Wheat	plastid	37.32	33.68
Bra037582.1-P	Field mustard	cytosol	7.29	33.33
TraesCS1D01G121600.1	Wheat	plastid	36.73	33.16
Os05t0182100-01	Rice	plastid	36.73	31.82
Zm00001d037616_P001	Maize	plastid	33.53	31.0
Bra022321.1-P	Field mustard	cytosol	22.16	30.89
TraesCS1B01G140100.1	Wheat	plastid	36.73	30.29
HORVU1Hr1G027550.1	Barley	plastid	36.44	30.19
Bra023116.1-P	Field mustard	plastid	27.41	28.14
Bra005759.1-P	Field mustard	plastid	25.66	28.11
Bra007011.1-P	Field mustard	plastid	25.07	26.63

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	EnsemblPlantsGene:Bra033620	EnsemblPlants:Bra033620.1	EnsemblPlants:Bra033620.1-P	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:IPR002885	InterPro:IPR011990	InterPro:IPR013026	InterPro:IPR019734
UniProt:M4EXT1	PFAM:PF01535	PFAM:PF14559	PFscan:PS50005	PFscan:PS50293	PANTHER:PTHR26312
PANTHER:PTHR26312:SF67	InterPro:Pentatricopeptide_repeat	SUPFAM:SSF48452	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	InterPro:TPR_repeat
UniParc:UPI000253F883	:	:	:	:	:

Description

AT4G39470 (E=2e-161) | chloroplast lumen common family protein

Coordinates

chrA06:+:25970627..25971902

Molecular Weight (calculated)

39112.4 Da

IEP (calculated)

9.845

GRAVY (calculated)

-0.443

Length

343 amino acids

Sequence
(BLAST)

001: MSPVGVSALS SPAKFHRRRE KAQTFTPTHF PNPNGFPSPW RKSRPFAPKL SQSLNFASPS PHLPLIRSST SPSSKDFLQI LARKAAIFLV GSFVFLGFCS
101: SKPALALPTA TASSQTELED EALFEKVRES EPENMEAMKA VLYKKMRRGK PEDAVKYVEK LMKLEPREVE WKLLEALCYE TMGQLSKAKR LFKDILRDNP
201: LLIRALHGLA MVMHKSHDSS VFDMLNEAME VARQGNRVTE ERNIQVLIGQ MHIVKGQFEE ALKIFQEMVK DNPRDFRPYL CQGIVYSLMD KKEEADQQFE
301: IYWSLAPEEF PQKGFLDDVA LAAQAKSRER LQNTFKAKFT HGK

Best Arabidopsis Sequence Match ( AT4G39470.1 )
(BLAST)

001: MCSIGVTALC SPAKFHHRRE QSLIFTPTHL RNPNGFQFRW RKSRPFAPRL AQPDNFAPPL PLIRSSTSLL SSKDFVQMLA RKAAILLVGS FVFLGFCSSK
101: PALALPTATV VSQAELEDEK MFEKLLENEP ENMEAMKAVV YKKMRRGKNE DAVKYVEKLM KLEPHEVEWK LLEALCYETM GELSKAKRLY KDILKEQPLL
201: IRALHGLAMV MHKTHDTSVF DMLIEAMEVA RQGNRVTEER NIQVLIGQMH IVEGQFEEGL KIFQQMVNDN PRDFRPYLCQ GIVYSLMDKK EEAAQQFEIY
301: WSLVPGEFPQ KGFLDDVALA AQAKSRERLQ NTFKAKFTQG R

Arabidopsis Description

AT4g39470/F23K16_100 [Source:UniProtKB/TrEMBL;Acc:Q94A56]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.