Factsheet for Bra005759.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 1
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY11220	Canola	plastid	99.68	99.68
CDX80831	Canola	cytosol, plastid	89.78	89.78
AT5G02590.1	Thale cress	cytosol	75.08	72.09
Bra017190.1-P	Field mustard	cytosol	38.66	61.11
KRH57052	Soybean	cytosol	35.14	50.23
Bra023116.1-P	Field mustard	plastid	53.35	50.0
KRG95856	Soybean	plastid	46.96	41.88
GSMUA_Achr7P15300_001	Banana	mitochondrion, plastid	45.69	41.33
KRH19745	Soybean	plastid	42.81	40.73
Solyc09g005740.1.1	Tomato	plastid	45.69	40.4
Bra037582.1-P	Field mustard	cytosol	9.58	40.0
KRH67571	Soybean	plastid	41.85	39.94
Bra007011.1-P	Field mustard	plastid	41.21	39.94
VIT_08s0040g02670.t01	Wine grape	plastid	46.01	39.89
PGSC0003DMT400061430	Potato	plastid	43.45	38.86
PGSC0003DMT400028724	Potato	plastid	42.17	38.37
Solyc10g085900.1.1	Tomato	plastid	35.46	36.27
PGSC0003DMT400091279	Potato	plastid	35.78	36.13
Bra022321.1-P	Field mustard	cytosol	25.24	32.11
Bra033620.1-P	Field mustard	plastid	28.11	25.66

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	EnsemblPlantsGene:Bra005759	EnsemblPlants:Bra005759.1	EnsemblPlants:Bra005759.1-P	ncoils:Coil
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005623	GO:GO:0005886
GO:GO:0016020	InterPro:IPR011990	InterPro:IPR013026	InterPro:IPR019734	UniProt:M4CNH1	PFAM:PF13432
PFAM:PF14559	PFscan:PS50005	PFscan:PS50293	PANTHER:PTHR26312	PANTHER:PTHR26312:SF76	SMART:SM00028
SUPFAM:SSF48452	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	InterPro:TPR_repeat	UniParc:UPI000253FB23	SEG:seg

Description

AT5G02590 (E=4e-086) | chloroplast lumen common family protein

Coordinates

chrA03:-:462205..463146

Molecular Weight (calculated)

35530.3 Da

IEP (calculated)

7.589

GRAVY (calculated)

-0.621

Length

313 amino acids

Sequence
(BLAST)

001: MASLAKFHYS DQPFHLKLNN GQRSFQPKPT SYRILQKPPP SRAIRASSSS PKPSFLKSTC VTLTTAAALF SASLHLSAKP AAATPIAPPP PSSTESIESD
101: QESSLEKHLA TNPNDSEALQ SLMKIKLQSK NLDQALEILN RLISLDPEEQ EWRILKAQVQ TYGGDFDSAT KGFEEILAKD PLRVEAYHGL VMAYSESESK
201: LSELEGRIGE AIERCKREDK KKDFRDFMLL IAQIRVMEGN PSEALRVYEE LVKDEPRDFR PYLCQGLIYT LLKKKDEAEK QFEQFRRLVP ENHPYKEYFD
301: SNMLNTNKLF AKS

Best Arabidopsis Sequence Match ( AT5G02590.1 )
(BLAST)

001: MVSLAKFHYC DQTLHLRLDT HRKPQPKPVS YRILHKPPPS RVIRASSFSS NPKPSFLKTT CVTLTTAAAL LSASLHLSTK PVTAATLVSP PPPPSTAADL
101: TSDQISSRPK EEEEEAALEK HLTKNPNDVE ALQSLMKIKF QTKNIDHALE ILNRLIEIQP EEQEWRILKA QVQTYGGDFD SATKGFEEVL SKDPFRVEAY
201: HGLVMAYSES ESKLSEIESR INEAIEKCKK ENKKDFRDFM LLIAQIRVIK GNPIEALRVY QELVKDEPKD FRPYLCQGLI YTLMKKKDEA EKQFAEFRRL
301: VPENHPYKEY LDANVLNTNK LFAKNQ

Arabidopsis Description

Tetratricopeptide repeat (TPR)-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q8LEV0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.