CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 4
mitochondrion 2
cytosol 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra005759.1-P	Field mustard	plastid	89.78	89.78
CDY11220	Canola	plastid	89.46	89.46
AT5G02590.1	Thale cress	cytosol	69.97	67.18
KRH57052	Soybean	cytosol	34.5	49.32
CDY46775	Canola	plastid	51.76	49.09
CDX93382	Canola	plastid	51.12	48.93
CDY18448	Canola	plastid	50.8	48.77
KRG95856	Soybean	plastid	45.69	40.74
Solyc09g005740.1.1	Tomato	plastid	45.05	39.83
KRH67571	Soybean	plastid	41.53	39.63
CDX95523	Canola	cytosol	9.9	39.24
VIT_08s0040g02670.t01	Wine grape	plastid	44.73	38.78
KRH19745	Soybean	plastid	40.26	38.3
PGSC0003DMT400028724	Potato	plastid	41.85	38.08
PGSC0003DMT400061430	Potato	plastid	42.49	38.0
GSMUA_Achr7P15300_001	Banana	mitochondrion, plastid	41.85	37.86
CDX78187	Canola	plastid	38.66	37.81
Solyc10g085900.1.1	Tomato	plastid	34.19	34.97
PGSC0003DMT400091279	Potato	plastid	34.5	34.84
CDX73544	Canola	plastid	25.24	31.23
CDY53407	Canola	cytosol, nucleus, plastid	14.7	27.88
CDX92236	Canola	plastid	26.84	26.33
CDY54811	Canola	plastid	26.52	26.02
CDX92326	Canola	plastid	26.52	26.02
CDY53183	Canola	plastid	28.43	25.95
CDX72699	Canola	plastid	27.8	25.36
CDY53406	Canola	plasma membrane	5.11	7.02

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	EnsemblPlants:CDX80831	ProteinID:CDX80831	ProteinID:CDX80831.1	ncoils:Coil
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00134225001	InterPro:IPR011990	InterPro:IPR013026
InterPro:IPR019734	PFAM:PF13432	PFAM:PF14559	PFscan:PS50005	PFscan:PS50293	PANTHER:PTHR26312
PANTHER:PTHR26312:SF76	SMART:SM00028	SUPFAM:SSF48452	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	InterPro:TPR_repeat
UniParc:UPI0004EE7CB4	SEG:seg	:	:	:	:

Description

BnaC03g00850D

Coordinates

chrLK031823:+:415904..416973

Molecular Weight (calculated)

35619.5 Da

IEP (calculated)

8.964

GRAVY (calculated)

-0.611

Length

313 amino acids

Sequence
(BLAST)

001: MASLAKFHYS DRTFHLKLND GQRSFQPKPT AYRILQKPRP SRAIRASSSP KPSFLKSTCV TLTTATALFS ASLHLSAKPA AATPISSPPP PSSTESIETD
101: QISSLEKHIA TNPNDSEALQ SLMKIKLQSK NLDQALEILN RLISLDPEEQ EWRILKAQVQ TYGGDFDSAT KGFEEILAKD PLRVEAYHGL VMAYSDSESK
201: LSELEGRIGE AIERCKREDK KKDFRDFMLL IAQIRVMEGN PSEALRVYQE LVKDEPRDFR PYLCQGLIYT LLKKKEEAEK QFEQFRRLVP ENHPYKDYFD
301: SNMLKTNKLF AKG

Best Arabidopsis Sequence Match ( AT5G02590.1 )
(BLAST)

001: MVSLAKFHYC DQTLHLRLDT HRKPQPKPVS YRILHKPPPS RVIRASSFSS NPKPSFLKTT CVTLTTAAAL LSASLHLSTK PVTAATLVSP PPPPSTAADL
101: TSDQISSRPK EEEEEAALEK HLTKNPNDVE ALQSLMKIKF QTKNIDHALE ILNRLIEIQP EEQEWRILKA QVQTYGGDFD SATKGFEEVL SKDPFRVEAY
201: HGLVMAYSES ESKLSEIESR INEAIEKCKK ENKKDFRDFM LLIAQIRVIK GNPIEALRVY QELVKDEPKD FRPYLCQGLI YTLMKKKDEA EKQFAEFRRL
301: VPENHPYKEY LDANVLNTNK LFAKNQ

Arabidopsis Description

Tetratricopeptide repeat (TPR)-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q8LEV0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.