CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG95856	Soybean	plastid	77.17	48.15
Bra017190.1-P	Field mustard	cytosol	43.38	47.98
KRH67571	Soybean	plastid	66.67	44.51
Bra005759.1-P	Field mustard	plastid	50.23	35.14
CDY11220	Canola	plastid	50.23	35.14
AT2G37400.1	Thale cress	plastid	53.42	35.14
CDX80831	Canola	cytosol, plastid	49.32	34.5
CDY46775	Canola	plastid	50.68	33.64
CDX93382	Canola	plastid	49.77	33.33
Bra023116.1-P	Field mustard	plastid	50.68	33.23
KRH19745	Soybean	plastid	49.77	33.13
CDY18448	Canola	plastid	48.86	32.82
AT5G02590.1	Thale cress	cytosol	47.95	32.21
GSMUA_Achr7P15300_001	Banana	mitochondrion, plastid	49.32	31.21
PGSC0003DMT400061430	Potato	plastid	49.32	30.86
VIT_08s0040g02670.t01	Wine grape	plastid	50.23	30.47
PGSC0003DMT400028724	Potato	plastid	47.49	30.23
AT3G53560.2	Thale cress	plastid	52.51	29.64
Solyc09g005740.1.1	Tomato	plastid	47.03	29.1
CDX78187	Canola	plastid	39.73	27.19
Solyc10g085900.1.1	Tomato	plastid	36.99	26.47
KRH07405	Soybean	cytosol	19.63	26.38
PGSC0003DMT400091279	Potato	plastid	36.99	26.13
Bra007011.1-P	Field mustard	plastid	38.36	26.01
AT3G09490.1	Thale cress	plastid	36.07	23.65
KRH42448	Soybean	mitochondrion, plastid	30.59	22.87
KRH64138	Soybean	plastid	34.7	21.35
CDX73544	Canola	plastid	24.66	21.34
KRH53808	Soybean	plastid	34.25	21.07
KRH58553	Soybean	plastid	27.4	20.83

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	EMBL:ACUP02002808	ncoils:Coil	EnsemblPlantsGene:GLYMA_05G036400	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	UniProt:I1JZZ0	InterPro:IPR011990	InterPro:IPR013026	InterPro:IPR019734
EnsemblPlants:KRH57052	ProteinID:KRH57052	ProteinID:KRH57052.1	PFscan:PS50005	PFscan:PS50293	PANTHER:PTHR26312
PANTHER:PTHR26312:SF76	SUPFAM:SSF48452	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	InterPro:TPR_repeat	UniParc:UPI00023C4B15
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr5:+:3200781..3201440

Molecular Weight (calculated)

26192.0 Da

IEP (calculated)

8.464

GRAVY (calculated)

-0.598

Length

219 amino acids

Sequence
(BLAST)

001: MCFHSSAVES NTAFTEEEAK RLLEERLSTN PCDTNALHML MEVKIRVHKM EEPFRVLDHL IELEPEELEW LLLKANMHIY NNNHTNMRKL FEEILKKDLL
101: REEVFHGLVM ATLRSNELLK GLLKRVEEAN KVCKKQKRDS DVRDFRLLIA QVKVMKGDFS KALKAYQELV KDEPRDFRPY LCQGIIYTIL RKKDEADKQF
201: NKFCRLVPKD RYHPYKEYF

Best Arabidopsis Sequence Match ( AT3G53560.2 )
(BLAST)

001: MTKTLSSYLQ RGENIRNRKA SSSSSSPISL LLAQGFYFSR VYLSHSAIME SLGKLQLHHQ PFHLSFTHTS SSTFPKNLFK SSIQPISSLK SASIKASSSK
101: FQNSITPLPK STPFRLFKST CITLTTAAAL LLANLHLKSP AIAAPIAPPP SVESKENVTL EEEERALDEH LITHPSDVDA LRSLMEVKIK SRKLTEAVEV
201: IDRLIKLEPE EKEWPVLKAN IFTYSGDLDL AKTGFEEILA KDPLRVEAYH GLLMAYSDAG LDLKEVESRI EEAMLKCKKE NNQNDFRDFK LLVAQIRVIE
301: GKHSEALKLY QELVKEEPRD FRPYLCQGII YTLLKKKDKA EEQFDNFRKL VPKNHPYREY FMDNMIATKL FSEKAQREMA EEMAGSTS

Arabidopsis Description

Tetratricopeptide repeat (TPR)-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9LFG3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.