Factsheet for Bra017190.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY18448	Canola	plastid	98.48	59.82
CDX93382	Canola	plastid	95.96	58.1
Bra023116.1-P	Field mustard	plastid	85.35	50.6
AT2G37400.1	Thale cress	plastid	83.84	49.85
Bra037582.1-P	Field mustard	cytosol	16.67	44.0
KRH57052	Soybean	cytosol	47.98	43.38
Bra005759.1-P	Field mustard	plastid	61.11	38.66
VIT_08s0040g02670.t01	Wine grape	plastid	63.64	34.9
PGSC0003DMT400061430	Potato	plastid	61.62	34.86
KRG95856	Soybean	plastid	61.62	34.76
Solyc09g005740.1.1	Tomato	plastid	62.12	34.75
KRH67571	Soybean	plastid	57.07	34.45
GSMUA_Achr7P15300_001	Banana	mitochondrion, plastid	59.09	33.81
Bra007011.1-P	Field mustard	plastid	53.54	32.82
PGSC0003DMT400028724	Potato	plastid	54.55	31.4
Solyc10g085900.1.1	Tomato	plastid	46.46	30.07
PGSC0003DMT400091279	Potato	plastid	46.46	29.68
Bra022321.1-P	Field mustard	cytosol	33.84	27.24
KRH19745	Soybean	plastid	44.44	26.75
Bra033620.1-P	Field mustard	plastid	34.85	20.12

Protein Annotations

EnsemblPlants:Bra017190.1	EnsemblPlants:Bra017190.1-P	EnsemblPlantsGene:Bra017190	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR011990	InterPro:IPR013026	InterPro:IPR019734	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf
InterPro:TPR_repeat	ncoils:Coil	PANTHER:PTHR26312	PANTHER:PTHR26312:SF76	PFAM:PF13174	PFAM:PF13432
PFscan:PS50293	SUPFAM:SSF48452	UniParc:UPI0002544441	UniProt:M4DL09	MapMan:35.1	:

Description

AT2G37400 (E=3e-092) | chloroplast lumen common family protein

Coordinates

chrA04:-:16112272..16112868

Molecular Weight (calculated)

23055.0 Da

IEP (calculated)

8.624

GRAVY (calculated)

-0.597

Length

198 amino acids

Sequence
(BLAST)

001: MEVRIKSRKL LEAIDLINRL IDLEPNEKEW PILKANVLSH SGDSDSAKTA FEEIIAKDPL RVEAYHGLAM AYSDSGDDLK AVEERIREAM VRCKKDVKDL
101: RDFKLLVAQI RVLEGKHEEA LKLYQELVKE EPRDFRPYLC QGIIYTLLKK GGEAEKQFEK FRRLVPRNHP YREYFMDNMV AKKLFAEKAQ REMAGTKG

Best Arabidopsis Sequence Match ( AT2G37400.1 )
(BLAST)

001: MESLGKLQLH QQPNHLSFTH FSSSFPKKPS SFSLRSLPRS TSSFKCISIK ASSSKSQDSK LSILKSTCVS FTAAAALFLV NLQLKPSPAI AAPVAATPLM
101: ESLKQSNGNV SFEEEERSLE EYLASHPDDV EALRSLMEVR IKSRKLLEAI ELIDRLIELE PEEKEWPMLK ANIFSYSGDL ESAKTGFEEI LVKDPLRVEA
201: YHGLVMAYSD SGDDLNAVEK RIEEAMVRCK KEKNRKDLRD FKLLVAQIRV IEGKHNEALK LYEELVKEEP RDFRPYLCQG IIYTVLKKEN EAEKQFEKFR
301: RLVPKNHPYR EYFMDNMVAS KLFAEKVQRE MAE

Arabidopsis Description

At2g37400 [Source:UniProtKB/TrEMBL;Acc:Q9ZUS6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.