Factsheet for Solyc09g005740.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
cytosol 2
nucleus 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

plastid: 20363867
plastid: 22908117
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400061430	Potato	plastid	84.75	85.71
Bra017190.1-P	Field mustard	cytosol	34.75	62.12
CDY46775	Canola	plastid	48.31	51.82
Bra023116.1-P	Field mustard	plastid	47.74	50.6
AT2G37400.1	Thale cress	plastid	44.92	47.75
VIT_08s0040g02670.t01	Wine grape	plastid	48.59	47.65
Solyc10g085900.1.1	Tomato	plastid	40.96	47.39
KRH57052	Soybean	cytosol	29.1	47.03
CDX93382	Canola	plastid	43.22	46.79
CDY18448	Canola	plastid	42.94	46.63
GSMUA_Achr7P15300_001	Banana	mitochondrion, plastid	44.92	45.95
Bra005759.1-P	Field mustard	plastid	40.4	45.69
CDY11220	Canola	plastid	40.11	45.37
CDX80831	Canola	cytosol, plastid	39.83	45.05
AT5G02590.1	Thale cress	cytosol	40.96	44.48
KRG95856	Soybean	plastid	42.09	42.45
KRH67571	Soybean	plastid	38.14	41.16
KRH19745	Soybean	plastid	37.29	40.12
AT3G53560.2	Thale cress	plastid	43.79	39.95
Bra007011.1-P	Field mustard	plastid	36.44	39.94
CDX78187	Canola	plastid	35.59	39.38
AT3G09490.1	Thale cress	plastid	31.07	32.93
CDX73544	Canola	plastid	23.16	32.41
Solyc04g051660.2.1	Tomato	plastid	25.14	25.8
Solyc01g008160.2.1	Tomato	plastid	20.62	22.81

Protein Annotations

EnsemblPlants:Solyc09g005740.1.1	EnsemblPlantsGene:Solyc09g005740.1	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR011990	InterPro:IPR013026	InterPro:IPR019734	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	InterPro:TPR_repeat
PANTHER:PTHR26312	PANTHER:PTHR26312:SF76	PFscan:PS50005	PFscan:PS50293	SEG:seg	SMART:SM00028
SUPFAM:SSF48452	UniParc:UPI000276B311	UniProt:K4CQ64	MapMan:35.1	:	:

Description

No Description!

Coordinates

chr9:+:508767..509831

Molecular Weight (calculated)

40863.2 Da

IEP (calculated)

8.429

GRAVY (calculated)

-0.492

Length

354 amino acids

Sequence
(BLAST)

001: MATLNPFGSR TNPFQKKLHN HRPIYAKSIS CLTFRTSPPP FYPSTIKACS FSSSSSQNSK IPKPLIPQTP NEQPHNLFSF VKPTLIATVT ATTLLFARYF
101: VFPKPALANQ AFTPTAMETD VVRDAVSEEE RERAIEEHLV NNPNDVEALR NLMEIRIKNK KILDAISIID RLIELEPNEN EWPLLKSHLY VNFGEIELAK
201: VGFNEILKKD PFRVEAYHGL VMAASQDESI DELMEIEKKI EEGIKLCKKE NKKTDLRDFK LLLAQIRVIE GKYEDALKVY QELVKEEPRD FRPYLCQGII
301: YTLMRKTNEA EKCFEKYRRL VPQGHPYARY FDENMIATKV FAQRAENERA SSKS

Best Arabidopsis Sequence Match ( AT2G37400.1 )
(BLAST)

001: MESLGKLQLH QQPNHLSFTH FSSSFPKKPS SFSLRSLPRS TSSFKCISIK ASSSKSQDSK LSILKSTCVS FTAAAALFLV NLQLKPSPAI AAPVAATPLM
101: ESLKQSNGNV SFEEEERSLE EYLASHPDDV EALRSLMEVR IKSRKLLEAI ELIDRLIELE PEEKEWPMLK ANIFSYSGDL ESAKTGFEEI LVKDPLRVEA
201: YHGLVMAYSD SGDDLNAVEK RIEEAMVRCK KEKNRKDLRD FKLLVAQIRV IEGKHNEALK LYEELVKEEP RDFRPYLCQG IIYTVLKKEN EAEKQFEKFR
301: RLVPKNHPYR EYFMDNMVAS KLFAEKVQRE MAE

Arabidopsis Description

At2g37400 [Source:UniProtKB/TrEMBL;Acc:Q9ZUS6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.