Factsheet for Bra023116.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 1
cytosol 1
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY46775	Canola	plastid	97.01	98.18
Bra017190.1-P	Field mustard	cytosol	50.6	85.35
AT2G37400.1	Thale cress	plastid	72.46	72.67
Bra005759.1-P	Field mustard	plastid	50.0	53.35
KRH57052	Soybean	cytosol	33.23	50.68
Bra007011.1-P	Field mustard	plastid	48.5	50.15
PGSC0003DMT400061430	Potato	plastid	52.1	49.71
VIT_08s0040g02670.t01	Wine grape	plastid	52.4	48.48
KRH67571	Soybean	plastid	47.6	48.48
Solyc09g005740.1.1	Tomato	plastid	50.6	47.74
KRG95856	Soybean	plastid	49.4	47.01
GSMUA_Achr7P15300_001	Banana	mitochondrion, plastid	47.9	46.24
PGSC0003DMT400028724	Potato	plastid	45.51	44.19
Bra037582.1-P	Field mustard	cytosol	9.58	42.67
PGSC0003DMT400091279	Potato	plastid	38.62	41.61
Solyc10g085900.1.1	Tomato	plastid	37.72	41.18
KRH19745	Soybean	plastid	40.42	41.03
Bra022321.1-P	Field mustard	cytosol	24.85	33.74
Bra033620.1-P	Field mustard	plastid	28.14	27.41

Protein Annotations

EnsemblPlants:Bra023116.1	EnsemblPlants:Bra023116.1-P	EnsemblPlantsGene:Bra023116	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR011990	InterPro:IPR013026	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	ncoils:Coil
PANTHER:PTHR26312	PANTHER:PTHR26312:SF76	PFAM:PF13432	PFscan:PS50293	SEG:seg	SUPFAM:SSF48452
UniParc:UPI000253FFFD	UniProt:M4E2W5	MapMan:35.1	:	:	:

Description

AT2G37400 (E=4e-116) | chloroplast lumen common family protein

Coordinates

chrA03:-:8768247..8769251

Molecular Weight (calculated)

38001.9 Da

IEP (calculated)

8.828

GRAVY (calculated)

-0.461

Length

334 amino acids

Sequence
(BLAST)

001: MESLGKLQPI QLSLSQFSSS LPQNRSSLSF RSFRRSTPSF KCASVKASSS KPQVLQSLPS RLLKSTCITF TAAAALLFAN LHLKPPPPAI ATPLPTTSAM
101: ESLKQSNVSL EEEERSLENH LSSHPEDVAA LRSLMEVKIK SRKLLEAIEI INRLIELEPE EKEWPILKAN IFTHSGDLES AKSVFEEILA KDPLRVEAYH
201: GLAMAYSESG DDLNVIEKRI HESMERCKKE KNVKDLRDFK LLVAQIRVIE GKHEEALKLY QELVKEEPRD FRPYLCQGII YTLLKKGDEA EKQFEKFRKL
301: VPRNHPYREY FMDNMVATKL FAEKAQRETA GSKS

Best Arabidopsis Sequence Match ( AT2G37400.1 )
(BLAST)

001: MESLGKLQLH QQPNHLSFTH FSSSFPKKPS SFSLRSLPRS TSSFKCISIK ASSSKSQDSK LSILKSTCVS FTAAAALFLV NLQLKPSPAI AAPVAATPLM
101: ESLKQSNGNV SFEEEERSLE EYLASHPDDV EALRSLMEVR IKSRKLLEAI ELIDRLIELE PEEKEWPMLK ANIFSYSGDL ESAKTGFEEI LVKDPLRVEA
201: YHGLVMAYSD SGDDLNAVEK RIEEAMVRCK KEKNRKDLRD FKLLVAQIRV IEGKHNEALK LYEELVKEEP RDFRPYLCQG IIYTVLKKEN EAEKQFEKFR
301: RLVPKNHPYR EYFMDNMVAS KLFAEKVQRE MAE

Arabidopsis Description

At2g37400 [Source:UniProtKB/TrEMBL;Acc:Q9ZUS6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.