Factsheet for PGSC0003DMT400091279

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 1
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g085900.1.1	Tomato	plastid	90.0	91.18
Bra017190.1-P	Field mustard	cytosol	29.68	46.46
PGSC0003DMT400028724	Potato	plastid	50.0	45.06
PGSC0003DMT400061430	Potato	plastid	47.74	42.29
AT2G37400.1	Thale cress	plastid	42.26	39.34
CDY46775	Canola	plastid	41.61	39.09
Bra023116.1-P	Field mustard	plastid	41.61	38.62
CDX93382	Canola	plastid	39.35	37.31
KRH57052	Soybean	cytosol	26.13	36.99
CDY18448	Canola	plastid	38.06	36.2
Bra005759.1-P	Field mustard	plastid	36.13	35.78
CDY11220	Canola	plastid	36.13	35.78
CDX80831	Canola	cytosol, plastid	34.84	34.5
VIT_08s0040g02670.t01	Wine grape	plastid	39.68	34.07
AT5G02590.1	Thale cress	cytosol	35.81	34.05
KRH19745	Soybean	plastid	35.48	33.43
GSMUA_Achr7P15300_001	Banana	mitochondrion, plastid	36.45	32.66
CDX78187	Canola	plastid	32.58	31.56
Bra007011.1-P	Field mustard	plastid	32.58	31.27
KRG95856	Soybean	plastid	34.84	30.77
KRH67571	Soybean	plastid	32.26	30.49
AT3G53560.2	Thale cress	plastid	37.74	30.15
PGSC0003DMT400080145	Potato	cytosol	12.26	28.36
CDX73544	Canola	plastid	22.58	27.67
AT3G09490.1	Thale cress	plastid	28.39	26.35
PGSC0003DMT400086906	Potato	plastid	25.81	25.0
PGSC0003DMT400080166	Potato	plastid	24.52	22.03

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR011990	InterPro:IPR013026	InterPro:IPR019734	UniProt:M1DM90	PFAM:PF13181	EnsemblPlantsGene:PGSC0003DMG400040850
PGSC:PGSC0003DMG400040850	EnsemblPlants:PGSC0003DMT400091279	PFscan:PS50005	PFscan:PS50293	PANTHER:PTHR26312	PANTHER:PTHR26312:SF76
SMART:SM00028	SUPFAM:SSF48452	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	InterPro:TPR_repeat	UniParc:UPI0002952DD1
SEG:seg	:	:	:	:	:

Description

Chloroplast lumen common family protein [Source:PGSC_GENE;Acc:PGSC0003DMG400040850]

Coordinates

chr10:-:52423203..52424135

Molecular Weight (calculated)

35792.1 Da

IEP (calculated)

4.762

GRAVY (calculated)

-0.356

Length

310 amino acids

Sequence
(BLAST)

001: MNTLNPLHLS AKSNNFQYQF IPSVLTQQPL NSFSFKTPFP LSIKLSKTPN SKPFKSLIPL SFLKPTLIST ITATALFFTG FYFNPKQAIC CPVSPVPTVD
101: TNVKEEVLEQ EETEKAPENV EILRNLLENR VKNRELDDAL SIINKLIELE PDEIEWRFLK SHLYVHNGEI ELAKLGFRDV ILKDPYYVEA YRGLVVAASE
201: DESVEEMKKI EKQVMEGINM CEKEEKESEL RDLKLILAQI WVIGGKYDEA LKVYQELVDE EPGDFRPYLC QGMIYTALKK NDEAEKYFEK YRGLVPQDHT
301: NARFEFMMAT

Best Arabidopsis Sequence Match ( AT2G37400.1 )
(BLAST)

001: MESLGKLQLH QQPNHLSFTH FSSSFPKKPS SFSLRSLPRS TSSFKCISIK ASSSKSQDSK LSILKSTCVS FTAAAALFLV NLQLKPSPAI AAPVAATPLM
101: ESLKQSNGNV SFEEEERSLE EYLASHPDDV EALRSLMEVR IKSRKLLEAI ELIDRLIELE PEEKEWPMLK ANIFSYSGDL ESAKTGFEEI LVKDPLRVEA
201: YHGLVMAYSD SGDDLNAVEK RIEEAMVRCK KEKNRKDLRD FKLLVAQIRV IEGKHNEALK LYEELVKEEP RDFRPYLCQG IIYTVLKKEN EAEKQFEKFR
301: RLVPKNHPYR EYFMDNMVAS KLFAEKVQRE MAE

Arabidopsis Description

At2g37400 [Source:UniProtKB/TrEMBL;Acc:Q9ZUS6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.