Factsheet for PGSC0003DMT400086906

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g008160.2.1	Tomato	plastid	99.38	99.38
Bra022321.1-P	Field mustard	cytosol	50.0	65.04
CDY53407	Canola	cytosol, nucleus, plastid	29.69	57.58
KRH07405	Soybean	cytosol	28.44	55.83
KRH58553	Soybean	plastid	49.69	55.21
VIT_01s0010g01810.t01	Wine grape	plastid	53.75	55.13
KRH42448	Soybean	mitochondrion, plastid	50.0	54.61
AT3G18420.1	Thale cress	plastid	52.5	53.16
CDX92236	Canola	plastid	52.81	52.98
CDX92326	Canola	plastid	52.81	52.98
CDY54811	Canola	plastid	52.81	52.98
PGSC0003DMT400080145	Potato	cytosol	15.0	35.82
PGSC0003DMT400091279	Potato	plastid	25.0	25.81
PGSC0003DMT400080166	Potato	plastid	27.81	25.8
PGSC0003DMT400028724	Potato	plastid	24.38	22.67
PGSC0003DMT400061430	Potato	plastid	22.81	20.86

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:102603168	MapMan:35.1	ncoils:Coil	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150
GO:GO:0009507	GO:GO:0009536	GO:GO:0009658	GO:GO:0009941	GO:GO:0009987	GO:GO:0016043
InterPro:IPR011990	InterPro:IPR013026	InterPro:IPR019734	UniProt:M1DCR5	PFAM:PF13432	EnsemblPlantsGene:PGSC0003DMG400036477
PGSC:PGSC0003DMG400036477	EnsemblPlants:PGSC0003DMT400086906	PFscan:PS50293	PANTHER:PTHR26312	PANTHER:PTHR26312:SF70	SMART:SM00028
SUPFAM:SSF48452	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	InterPro:TPR_repeat	UniParc:UPI0002957210	RefSeq:XP_006348542.1
SEG:seg	:	:	:	:	:

Description

Tetratricopeptide repeat-containing protein [Source:PGSC_GENE;Acc:PGSC0003DMG400036477]

Coordinates

chr1:-:3836168..3837130

Molecular Weight (calculated)

36307.1 Da

IEP (calculated)

4.961

GRAVY (calculated)

-0.522

Length

320 amino acids

Sequence
(BLAST)

001: MNSTLTIGSS SFFHHSTTFP NSPSRSSIFT IPKTAHKSYS RRFVLQASVN GNSKSNPLIS TLKSAGVAVV FAAVALGKFP VGTSFARAET PPAAVMEEQQ
101: QEEEEEGSPL TQFLESSPEA IEALKNLLQE KLESGEDEES LKILKKLSSA QPENTEWKFL TARLLNEMGK LEDAREVFEE ILSKTPLSFE ALFENALLMD
201: RCGEGVKVIQ RLEEALRLAE EESKVKESRD IRFIMAQVQF LQKNVEEALR SYDELEKEDP KDFRPYFCRG MIYSLLDRNK EAREQFAKYR ELSPKKFEVE
301: GYLRTALSRM KLFGTDEKES

Best Arabidopsis Sequence Match ( AT3G18420.1 )
(BLAST)

001: MISSLSASSS LVSSFVAVKA TPVTGPLIPR RDLLSIRIRA SSNQNSSGYC FPEKFKSFAK SAILIGAAVS MTGKFSTLPV KAESPVTTIE KTYEEVKEEK
101: LSEITPLSEL LDSTPEAVET LRSLLQQKLE KGEDEEALKL LERLVAAQPE ETEWKFLMAR LLGEMGRPEN ARQMFEEILQ RNPLSFEALF ENALLMDRSG
201: EGNAVLQRLE DALAVAEAEY LVKEARDVRL IIAQIHFLQK NVDEALKSYE QLTKEDPKDF RPYFCRGMIY SLLDKNVEAK EQFAKYRELS PKKFEVEGYL
301: RTPLSKMKLF GGSEEN

Arabidopsis Description

SG1protein SLOW GREEN 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LS48]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.