Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 1
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra022321.1-P | Field mustard | cytosol | 96.97 | 65.04 |
| CDY54811 | Canola | plastid | 95.15 | 49.22 |
| CDX92326 | Canola | plastid | 95.15 | 49.22 |
| CDX92236 | Canola | plastid | 95.15 | 49.22 |
| AT3G18420.1 | Thale cress | plastid | 79.39 | 41.46 |
| VIT_01s0010g01810.t01 | Wine grape | plastid | 63.64 | 33.65 |
| Solyc01g008160.2.1 | Tomato | plastid | 58.18 | 30.0 |
| PGSC0003DMT400086906 | Potato | plastid | 57.58 | 29.69 |
| CDX95523 | Canola | cytosol | 8.48 | 17.72 |
| CDX93382 | Canola | plastid | 34.55 | 17.43 |
| CDY46775 | Canola | plastid | 33.33 | 16.67 |
| CDY18448 | Canola | plastid | 31.52 | 15.95 |
| CDX78187 | Canola | plastid | 29.7 | 15.31 |
| CDY53183 | Canola | plastid | 31.52 | 15.16 |
| CDY11220 | Canola | plastid | 28.48 | 15.02 |
| CDX80831 | Canola | cytosol, plastid | 27.88 | 14.7 |
| CDX72699 | Canola | plastid | 30.3 | 14.58 |
| CDX73544 | Canola | plastid | 15.15 | 9.88 |
| CDY53406 | Canola | plasma membrane | 7.88 | 5.7 |
Protein Annotations
| EnsemblPlants:CDY53407 | EnsemblPlantsGene:GSBRNA2T00010633001 | Gene3D:1.25.40.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR011990 | InterPro:IPR013026 | InterPro:TPR-contain_dom | InterPro:TPR-like_helical_dom_sf | ncoils:Coil | PANTHER:PTHR26312 |
| PANTHER:PTHR26312:SF70 | PFAM:PF14559 | PFscan:PS50293 | ProteinID:CDY53407 | ProteinID:CDY53407.1 | SEG:seg |
| SUPFAM:SSF48452 | UniParc:UPI0004EF146D | UniProt:A0A078ITS8 | MapMan:35.1 | : | : |
Description
BnaCnng25100DBnaCnng25100D protein [Source:UniProtKB/TrEMBL;Acc:A0A078ITS8]
Coordinates
chrLK033197:-:62170..62667
Molecular Weight (calculated)
18495.1 Da
IEP (calculated)
4.128
GRAVY (calculated)
-0.357
Length
165 amino acids
Sequence
(BLAST)
(BLAST)
001: MTGKLSTLPA KAESPVTTTE ELKDENVSSE IEPTSPLTEL LESTPEAVKT LRSLLQQKLE NGEDEEALKL LEKLVTAQPE ETEWKFLMAR LLGEMGRTEN
101: ARQVFEEILQ RNPLSFEALF ENALLMDRSG EGDAVLQRLE DALAVAEAEN MVKEIRDVRL IIAQI
101: ARQVFEEILQ RNPLSFEALF ENALLMDRSG EGDAVLQRLE DALAVAEAEN MVKEIRDVRL IIAQI
001: MISSLSASSS LVSSFVAVKA TPVTGPLIPR RDLLSIRIRA SSNQNSSGYC FPEKFKSFAK SAILIGAAVS MTGKFSTLPV KAESPVTTIE KTYEEVKEEK
101: LSEITPLSEL LDSTPEAVET LRSLLQQKLE KGEDEEALKL LERLVAAQPE ETEWKFLMAR LLGEMGRPEN ARQMFEEILQ RNPLSFEALF ENALLMDRSG
201: EGNAVLQRLE DALAVAEAEY LVKEARDVRL IIAQIHFLQK NVDEALKSYE QLTKEDPKDF RPYFCRGMIY SLLDKNVEAK EQFAKYRELS PKKFEVEGYL
301: RTPLSKMKLF GGSEEN
101: LSEITPLSEL LDSTPEAVET LRSLLQQKLE KGEDEEALKL LERLVAAQPE ETEWKFLMAR LLGEMGRPEN ARQMFEEILQ RNPLSFEALF ENALLMDRSG
201: EGNAVLQRLE DALAVAEAEY LVKEARDVRL IIAQIHFLQK NVDEALKSYE QLTKEDPKDF RPYFCRGMIY SLLDKNVEAK EQFAKYRELS PKKFEVEGYL
301: RTPLSKMKLF GGSEEN
Arabidopsis Description
SG1protein SLOW GREEN 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LS48]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.