CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 1
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra017190.1-P	Field mustard	cytosol	59.82	98.48
CDX93382	Canola	plastid	91.41	91.13
AT2G37400.1	Thale cress	plastid	71.47	69.97
CDY46775	Canola	plastid	70.55	69.7
CDY11220	Canola	plastid	50.92	53.04
CDX80831	Canola	cytosol, plastid	48.77	50.8
CDX78187	Canola	plastid	48.16	49.06
KRH57052	Soybean	cytosol	32.82	48.86
VIT_08s0040g02670.t01	Wine grape	plastid	53.99	48.75
GSMUA_Achr7P15300_001	Banana	mitochondrion, plastid	48.77	45.95
KRG95856	Soybean	plastid	48.47	45.01
PGSC0003DMT400061430	Potato	plastid	47.55	44.29
KRH67571	Soybean	plastid	44.17	43.9
CDX73544	Canola	plastid	33.44	43.08
CDX95523	Canola	cytosol	10.43	43.04
Solyc09g005740.1.1	Tomato	plastid	46.63	42.94
PGSC0003DMT400028724	Potato	plastid	44.48	42.15
PGSC0003DMT400091279	Potato	plastid	36.2	38.06
Solyc10g085900.1.1	Tomato	plastid	35.28	37.58
KRH19745	Soybean	plastid	37.42	37.08
CDY53407	Canola	cytosol, nucleus, plastid	15.95	31.52
CDX92236	Canola	plastid	29.45	30.09
CDX92326	Canola	plastid	28.83	29.47
CDY54811	Canola	plastid	28.83	29.47
CDY53183	Canola	plastid	26.99	25.66
CDX72699	Canola	plastid	26.69	25.36
CDY53406	Canola	plasma membrane	6.44	9.21

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	UniProt:A0A078G1F1	EnsemblPlants:CDY18448	ProteinID:CDY18448	ProteinID:CDY18448.1
ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00005446001	InterPro:IPR011990
InterPro:IPR013026	InterPro:IPR019734	PFAM:PF13174	PFAM:PF13432	PFscan:PS50293	PANTHER:PTHR26312
PANTHER:PTHR26312:SF76	SUPFAM:SSF48452	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	InterPro:TPR_repeat	UniParc:UPI0004EF2565
SEG:seg	:	:	:	:	:

Description

BnaA04g21390DBnaA04g21390D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G1F1]

Coordinates

chrLK032085:+:540390..541904

Molecular Weight (calculated)

36894.4 Da

IEP (calculated)

8.754

GRAVY (calculated)

-0.480

Length

326 amino acids

Sequence
(BLAST)

001: MESLGKLHLN QHPIHLSLTQ SPPSFPRKPS SLSFKSFKRA SIRASSSKPQ QSLPSRLLKS TCVTFTAASA LLLANLHLKP PPSIASPLTP SVESLNHQNA
101: TVSLEEEETS LETHLSSHPD DVSALRSLME VRIKSRKLLE AIDLINRLID LEPDEKEWPI LKANVLSHSG DSDSAKTAFE EIIAKDPLRV EAYHGLAMAY
201: SDSGDDLKAV EERIREAMVR CKKDVKDLRD FKLLVAQIRV LEGKHEEALR LYQELVKEEP RDFRPYLCQG IIYTLLKKGG EAEKQFEKFR RLVPRNHPYR
301: EYFMDNMVAT KLFAEKAQRE MAGTKG

Best Arabidopsis Sequence Match ( AT2G37400.1 )
(BLAST)

001: MESLGKLQLH QQPNHLSFTH FSSSFPKKPS SFSLRSLPRS TSSFKCISIK ASSSKSQDSK LSILKSTCVS FTAAAALFLV NLQLKPSPAI AAPVAATPLM
101: ESLKQSNGNV SFEEEERSLE EYLASHPDDV EALRSLMEVR IKSRKLLEAI ELIDRLIELE PEEKEWPMLK ANIFSYSGDL ESAKTGFEEI LVKDPLRVEA
201: YHGLVMAYSD SGDDLNAVEK RIEEAMVRCK KEKNRKDLRD FKLLVAQIRV IEGKHNEALK LYEELVKEEP RDFRPYLCQG IIYTVLKKEN EAEKQFEKFR
301: RLVPKNHPYR EYFMDNMVAS KLFAEKVQRE MAE

Arabidopsis Description

At2g37400 [Source:UniProtKB/TrEMBL;Acc:Q9ZUS6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.