CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH57052	Soybean	cytosol	44.51	66.67
KRG95856	Soybean	plastid	70.12	65.53
Bra017190.1-P	Field mustard	cytosol	34.45	57.07
CDY46775	Canola	plastid	48.48	48.18
Bra023116.1-P	Field mustard	plastid	48.48	47.6
AT2G37400.1	Thale cress	plastid	46.34	45.65
CDX93382	Canola	plastid	44.51	44.65
CDY18448	Canola	plastid	43.9	44.17
Bra005759.1-P	Field mustard	plastid	39.94	41.85
CDY11220	Canola	plastid	39.94	41.85
KRH19745	Soybean	plastid	41.77	41.64
CDX80831	Canola	cytosol, plastid	39.63	41.53
GSMUA_Achr7P15300_001	Banana	mitochondrion, plastid	42.99	40.75
VIT_08s0040g02670.t01	Wine grape	plastid	44.51	40.44
PGSC0003DMT400028724	Potato	plastid	42.07	40.12
PGSC0003DMT400061430	Potato	plastid	42.38	39.71
AT3G53560.2	Thale cress	plastid	46.65	39.43
Solyc09g005740.1.1	Tomato	plastid	41.16	38.14
AT5G02590.1	Thale cress	cytosol	37.8	38.04
CDX78187	Canola	plastid	35.37	36.25
Bra007011.1-P	Field mustard	plastid	34.76	35.29
CDX73544	Canola	plastid	26.22	33.99
Solyc10g085900.1.1	Tomato	plastid	30.49	32.68
PGSC0003DMT400091279	Potato	plastid	30.49	32.26
AT3G09490.1	Thale cress	plastid	31.1	30.54
KRH07405	Soybean	cytosol	14.33	28.83
KRH58553	Soybean	plastid	25.3	28.82
KRH42448	Soybean	mitochondrion, plastid	24.39	27.3
KRH53808	Soybean	plastid	27.13	25.0
KRH64138	Soybean	plastid	27.13	25.0

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	UniProt:A0A0R0KSI5	EMBL:ACUP02002068	ncoils:Coil	EnsemblPlantsGene:GLYMA_03G173800
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR011990	InterPro:IPR013026	InterPro:IPR019734
EnsemblPlants:KRH67571	ProteinID:KRH67571	ProteinID:KRH67571.1	PFAM:PF13174	PFscan:PS50005	PFscan:PS50293
PANTHER:PTHR26312	PANTHER:PTHR26312:SF76	SUPFAM:SSF48452	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	InterPro:TPR_repeat
UniParc:UPI0006ED5C34	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr3:+:38773234..38774265

Molecular Weight (calculated)

37709.1 Da

IEP (calculated)

9.084

GRAVY (calculated)

-0.614

Length

328 amino acids

Sequence
(BLAST)

001: MDSLPKLRHP SPFPTPLSSS LSFRSLPPPH FPSSSFRLPS IRASSSPSQN DPAFRTPRNK PSLPPLLQTL TSFLSPLLET TCIVIAAAAF FFMRFHHTPA
101: VIAAPLTSPA AETDTAFTQE EAERLLEERL STNPRDTERS TRSWRQKSKR LEPEEQEWPL LKANMHIYND DHAPACKLFE EILKKDPLRV EAFHGLVMAT
201: AQSNEPLKSL LKRVEEAIEV CKKQKKDSDV RDFRLLIAQI KVMEGDYTEA LKAYQELVKE EPRDFRPYLC QGIIYTLLRK KDEADKQFNK FRRLVPKDHP
301: YKDYFEDNMF ATKFFSQKLE REGAGARG

Best Arabidopsis Sequence Match ( AT3G53560.2 )
(BLAST)

001: MTKTLSSYLQ RGENIRNRKA SSSSSSPISL LLAQGFYFSR VYLSHSAIME SLGKLQLHHQ PFHLSFTHTS SSTFPKNLFK SSIQPISSLK SASIKASSSK
101: FQNSITPLPK STPFRLFKST CITLTTAAAL LLANLHLKSP AIAAPIAPPP SVESKENVTL EEEERALDEH LITHPSDVDA LRSLMEVKIK SRKLTEAVEV
201: IDRLIKLEPE EKEWPVLKAN IFTYSGDLDL AKTGFEEILA KDPLRVEAYH GLLMAYSDAG LDLKEVESRI EEAMLKCKKE NNQNDFRDFK LLVAQIRVIE
301: GKHSEALKLY QELVKEEPRD FRPYLCQGII YTLLKKKDKA EEQFDNFRKL VPKNHPYREY FMDNMIATKL FSEKAQREMA EEMAGSTS

Arabidopsis Description

Tetratricopeptide repeat (TPR)-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9LFG3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.