CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
cytosol 1
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH57052	Soybean	cytosol	33.13	49.77
Bra017190.1-P	Field mustard	cytosol	26.75	44.44
KRG95856	Soybean	plastid	46.5	43.59
Bra005759.1-P	Field mustard	plastid	40.73	42.81
CDY11220	Canola	plastid	40.43	42.49
KRH67571	Soybean	plastid	41.64	41.77
CDY46775	Canola	plastid	40.73	40.61
Bra023116.1-P	Field mustard	plastid	41.03	40.42
CDX80831	Canola	cytosol, plastid	38.3	40.26
AT2G37400.1	Thale cress	plastid	40.43	39.94
VIT_08s0040g02670.t01	Wine grape	plastid	43.16	39.34
AT5G02590.1	Thale cress	cytosol	38.6	38.96
CDX93382	Canola	plastid	38.6	38.84
PGSC0003DMT400061430	Potato	plastid	39.82	37.43
CDY18448	Canola	plastid	37.08	37.42
Solyc09g005740.1.1	Tomato	plastid	40.12	37.29
GSMUA_Achr7P15300_001	Banana	mitochondrion, plastid	39.21	37.28
PGSC0003DMT400028724	Potato	plastid	38.91	37.21
Solyc10g085900.1.1	Tomato	plastid	33.43	35.95
PGSC0003DMT400091279	Potato	plastid	33.43	35.48
AT3G53560.2	Thale cress	plastid	39.51	33.51
Bra007011.1-P	Field mustard	plastid	32.83	33.44
CDX78187	Canola	plastid	32.22	33.12
KRH58553	Soybean	plastid	27.05	30.9
CDX73544	Canola	plastid	23.71	30.83
KRH42448	Soybean	mitochondrion, plastid	25.53	28.67
KRH07405	Soybean	cytosol	13.98	28.22
AT3G09490.1	Thale cress	plastid	28.27	27.84
KRH53808	Soybean	plastid	27.36	25.28
KRH64138	Soybean	plastid	27.05	25.0

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:100812214	MapMan:35.1	EMBL:ACUP02008197	EnsemblPlantsGene:GLYMA_13G133400	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	UniProt:I1LYW5	InterPro:IPR011990	InterPro:IPR013026	InterPro:IPR019734
EnsemblPlants:KRH19745	ProteinID:KRH19745	ProteinID:KRH19745.1	PFAM:PF13432	PFscan:PS50293	PANTHER:PTHR26312
PANTHER:PTHR26312:SF76	SMART:SM00028	SUPFAM:SSF48452	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	InterPro:TPR_repeat
UniParc:UPI000233AADD	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr13:+:24565600..24567112

Molecular Weight (calculated)

37342.6 Da

IEP (calculated)

5.915

GRAVY (calculated)

-0.492

Length

329 amino acids

Sequence
(BLAST)

001: MESLPKIRHS HISLNHSLLQ RGSQCHRSSF PTPFSSLSPP LPPFSPIRVS SSPSPSPKPQ NPLTLNLLLP PLVKPTCIAI AATAFFFMRL HSPPVAFAST
101: PVAPPESAES ETLPNESATE EQLRTTDTDA LQSLLQTKIR ALEINEAIRV LDRLTELEPE ESEYPLLKAH LHMRYGEHEL AANVFEELLH RDPFHVEAYR
201: GLLMLTSETN KPTEELLKRI EEAAAKVCEE QERDSDVRDL KLLIAQIKVI NGDLSEALKV YEELVKEEPK DFRPYLCQGI VYSMLRKKDE AEKQFEKYRA
301: LVPEDHPYKH HFEENTQFLE RRGVGGAKS

Best Arabidopsis Sequence Match ( AT3G53560.2 )
(BLAST)

001: MTKTLSSYLQ RGENIRNRKA SSSSSSPISL LLAQGFYFSR VYLSHSAIME SLGKLQLHHQ PFHLSFTHTS SSTFPKNLFK SSIQPISSLK SASIKASSSK
101: FQNSITPLPK STPFRLFKST CITLTTAAAL LLANLHLKSP AIAAPIAPPP SVESKENVTL EEEERALDEH LITHPSDVDA LRSLMEVKIK SRKLTEAVEV
201: IDRLIKLEPE EKEWPVLKAN IFTYSGDLDL AKTGFEEILA KDPLRVEAYH GLLMAYSDAG LDLKEVESRI EEAMLKCKKE NNQNDFRDFK LLVAQIRVIE
301: GKHSEALKLY QELVKEEPRD FRPYLCQGII YTLLKKKDKA EEQFDNFRKL VPKNHPYREY FMDNMIATKL FSEKAQREMA EEMAGSTS

Arabidopsis Description

Tetratricopeptide repeat (TPR)-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9LFG3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.