CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra017190.1-P	Field mustard	cytosol	58.1	95.96
CDY18448	Canola	plastid	91.13	91.41
AT2G37400.1	Thale cress	plastid	72.78	71.47
CDY46775	Canola	plastid	71.56	70.91
CDY11220	Canola	plastid	51.38	53.67
CDX80831	Canola	cytosol, plastid	48.93	51.12
KRH57052	Soybean	cytosol	33.33	49.77
VIT_08s0040g02670.t01	Wine grape	plastid	54.13	49.03
CDX78187	Canola	plastid	46.79	47.81
GSMUA_Achr7P15300_001	Banana	mitochondrion, plastid	50.15	47.4
KRG95856	Soybean	plastid	50.15	46.72
KRH67571	Soybean	plastid	44.65	44.51
CDX95523	Canola	cytosol	10.7	44.3
PGSC0003DMT400061430	Potato	plastid	47.09	44.0
Solyc09g005740.1.1	Tomato	plastid	46.79	43.22
PGSC0003DMT400028724	Potato	plastid	44.65	42.44
CDX73544	Canola	plastid	32.11	41.5
Solyc10g085900.1.1	Tomato	plastid	37.0	39.54
PGSC0003DMT400091279	Potato	plastid	37.31	39.35
KRH19745	Soybean	plastid	38.84	38.6
CDY53407	Canola	cytosol, nucleus, plastid	17.43	34.55
CDX92236	Canola	plastid	29.66	30.41
CDX92326	Canola	plastid	29.36	30.09
CDY54811	Canola	plastid	29.36	30.09
CDY53183	Canola	plastid	28.13	26.82
CDX72699	Canola	plastid	28.13	26.82
CDY53406	Canola	plasma membrane	6.12	8.77

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	EnsemblPlants:CDX93382	ProteinID:CDX93382	ProteinID:CDX93382.1	ncoils:Coil
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00155368001	InterPro:IPR011990	InterPro:IPR013026
InterPro:IPR019734	PFAM:PF13174	PFAM:PF13432	PFscan:PS50293	PANTHER:PTHR26312	PANTHER:PTHR26312:SF76
SUPFAM:SSF48452	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	InterPro:TPR_repeat	UniParc:UPI0004EE6F1A	SEG:seg

Description

BnaC04g45140D

Coordinates

chrLK031875:+:1454604..1455958

Molecular Weight (calculated)

36991.5 Da

IEP (calculated)

9.021

GRAVY (calculated)

-0.477

Length

327 amino acids

Sequence
(BLAST)

001: MESLGKLHLN QHPIHLSLTQ SPSSFPQKPS SLSFKSFKRA SIRASSSSKS SLPSRLLKST CVTFTAASAL FLANLHLKPP PAIASPLTPS VESLNHQNVT
101: VSLEEEETSL ENHLSSHPDD VSALRSLMEV RIKSRKLLEA IDLINRLIDL EPEEKEWPIL KANILSHSGD SESAKNAFEE IISKDPLRVE AYHGLAMAYS
201: DSGDDLKAVE GRIREAMVRC KKERNVKDLR DFKLLVAQIR VLEGKHEEAL KLYQELVKEE PRDFRPYLCQ GIIYTLLKKG GEAEKQFEKF RRLVPRNHPY
301: REYFMDNMVA TKLFAEKAQR EMAGTKG

Best Arabidopsis Sequence Match ( AT2G37400.1 )
(BLAST)

001: MESLGKLQLH QQPNHLSFTH FSSSFPKKPS SFSLRSLPRS TSSFKCISIK ASSSKSQDSK LSILKSTCVS FTAAAALFLV NLQLKPSPAI AAPVAATPLM
101: ESLKQSNGNV SFEEEERSLE EYLASHPDDV EALRSLMEVR IKSRKLLEAI ELIDRLIELE PEEKEWPMLK ANIFSYSGDL ESAKTGFEEI LVKDPLRVEA
201: YHGLVMAYSD SGDDLNAVEK RIEEAMVRCK KEKNRKDLRD FKLLVAQIRV IEGKHNEALK LYEELVKEEP RDFRPYLCQG IIYTVLKKEN EAEKQFEKFR
301: RLVPKNHPYR EYFMDNMVAS KLFAEKVQRE MAE

Arabidopsis Description

At2g37400 [Source:UniProtKB/TrEMBL;Acc:Q9ZUS6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.