Factsheet for Solyc10g085900.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 2
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

plastid: 22908117

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400091279	Potato	plastid	91.18	90.0
Bra017190.1-P	Field mustard	cytosol	30.07	46.46
Solyc09g005740.1.1	Tomato	plastid	47.39	40.96
AT2G37400.1	Thale cress	plastid	42.16	38.74
CDY46775	Canola	plastid	41.18	38.18
Bra023116.1-P	Field mustard	plastid	41.18	37.72
CDX93382	Canola	plastid	39.54	37.0
KRH57052	Soybean	cytosol	26.47	36.99
Bra005759.1-P	Field mustard	plastid	36.27	35.46
CDY11220	Canola	plastid	36.27	35.46
CDY18448	Canola	plastid	37.58	35.28
VIT_08s0040g02670.t01	Wine grape	plastid	40.52	34.35
CDX80831	Canola	cytosol, plastid	34.97	34.19
KRH19745	Soybean	plastid	35.95	33.43
GSMUA_Achr7P15300_001	Banana	mitochondrion, plastid	37.25	32.95
AT5G02590.1	Thale cress	cytosol	34.97	32.82
KRG95856	Soybean	plastid	35.95	31.34
CDX78187	Canola	plastid	32.68	31.25
AT3G53560.2	Thale cress	plastid	39.22	30.93
Bra007011.1-P	Field mustard	plastid	32.35	30.65
KRH67571	Soybean	plastid	32.68	30.49
CDX73544	Canola	plastid	22.88	27.67
AT3G09490.1	Thale cress	plastid	29.74	27.25
Solyc01g008160.2.1	Tomato	plastid	26.8	25.62
Solyc04g051660.2.1	Tomato	plastid	22.55	20.0

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR011990	InterPro:IPR013026	InterPro:IPR019734	UniProt:K4D424	PFAM:PF13181	PFscan:PS50005
PFscan:PS50293	PANTHER:PTHR26312	PANTHER:PTHR26312:SF76	SMART:SM00028	SUPFAM:SSF48452	EnsemblPlantsGene:Solyc10g085900.1
EnsemblPlants:Solyc10g085900.1.1	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	InterPro:TPR_repeat	UniParc:UPI0002769342	SEG:seg

Description

No Description!

Coordinates

chr10:+:64927655..64928575

Molecular Weight (calculated)

35116.3 Da

IEP (calculated)

4.740

GRAVY (calculated)

-0.291

Length

306 amino acids

Sequence
(BLAST)

001: MNTLNLLPLS AKSNNFQYQF IPSVLTQQPL NTLSFKSPFP LSTKLSKTSN SEPLKSLIPL SFLKPTLIST ITATALFFTG FYFNPKQAIC CPVSPVPIVD
101: TNVKEEVLEQ EGTENVEILR NLLENRVKNR ELDDALSIIN KLIELEPEEI EWRFLKSHLY VHSGEIQLAK LGFRDVILKD PYYVEAYRGL VVAASEDESV
201: EEMKKIEKQV EEGINMCKKE EKESELRDLK LILAQIWVIG GKYDEALKVY QELVDEEPGD FRPYLCQGMI YTALKKNDEA EKCFDKYRGL IPQDHTNARF
301: EFMMAT

Best Arabidopsis Sequence Match ( AT2G37400.1 )
(BLAST)

001: MESLGKLQLH QQPNHLSFTH FSSSFPKKPS SFSLRSLPRS TSSFKCISIK ASSSKSQDSK LSILKSTCVS FTAAAALFLV NLQLKPSPAI AAPVAATPLM
101: ESLKQSNGNV SFEEEERSLE EYLASHPDDV EALRSLMEVR IKSRKLLEAI ELIDRLIELE PEEKEWPMLK ANIFSYSGDL ESAKTGFEEI LVKDPLRVEA
201: YHGLVMAYSD SGDDLNAVEK RIEEAMVRCK KEKNRKDLRD FKLLVAQIRV IEGKHNEALK LYEELVKEEP RDFRPYLCQG IIYTVLKKEN EAEKQFEKFR
301: RLVPKNHPYR EYFMDNMVAS KLFAEKVQRE MAE

Arabidopsis Description

At2g37400 [Source:UniProtKB/TrEMBL;Acc:Q9ZUS6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.