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Thale cress
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Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • plastid 7
  • mitochondrion 1
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:cytosol, mitochondrion, plastid
BaCelLo:plastid
ChloroP:plastid
iPSORT:mitochondrion
MultiLoc:plastid
Predotar:plastid
PProwler:plastid
TargetP:plastid
WoLF PSORT:plastid
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
AT2G37400.1 Thale cress plastid 38.92 39.04
AT5G02590.1 Thale cress cytosol 36.23 37.12
KRH57052 Soybean cytosol 23.65 36.07
KRG95856 Soybean plastid 33.53 31.91
KRH67571 Soybean plastid 30.54 31.1
Solyc09g005740.1.1 Tomato plastid 32.93 31.07
PGSC0003DMT400028724 Potato plastid 31.44 30.52
VIT_08s0040g02670.t01 Wine grape plastid 32.93 30.47
GSMUA_Achr7P15300_001 Banana mitochondrion, plastid 31.14 30.06
Solyc10g085900.1.1 Tomato plastid 27.25 29.74
PGSC0003DMT400061430 Potato plastid 31.14 29.71
AT3G53560.2 Thale cress plastid 33.83 29.12
PGSC0003DMT400091279 Potato plastid 26.35 28.39
KRH19745 Soybean plastid 27.84 28.27
AT3G18420.1 Thale cress plastid 21.26 22.47
AT4G39470.1 Thale cress plastid 20.36 19.94
Protein Annotations
Gene3D:1.25.40.10MapMan:35.1EntrezGene:820106UniProt:A0A178VFP4ProteinID:AAF23281.1ProteinID:AEE74773.1
ArrayExpress:AT3G09490EnsemblPlantsGene:AT3G09490RefSeq:AT3G09490TAIR:AT3G09490RefSeq:AT3G09490-TAIR-GEnsemblPlants:AT3G09490.1
TAIR:AT3G09490.1EMBL:BT029519ncoils:CoilGO:GO:0003674GO:GO:0005488GO:GO:0005515
GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005737GO:GO:0006091GO:GO:0008150
GO:GO:0008152GO:GO:0009536GO:GO:0009543GO:GO:0009579GO:GO:0009987GO:GO:0015979
GO:GO:0019684InterPro:IPR011990InterPro:IPR013026InterPro:IPR019734RefSeq:NP_187560.1ProteinID:OAP03843.1
PO:PO:0000013PO:PO:0000230PO:PO:0000293PO:PO:0001054PO:PO:0007064PO:PO:0007095
PO:PO:0007098PO:PO:0007103PO:PO:0007115PO:PO:0007123PO:PO:0007611PO:PO:0007616
PO:PO:0008019PO:PO:0009005PO:PO:0009025PO:PO:0009029PO:PO:0009031PO:PO:0009032
PO:PO:0009046PO:PO:0009047PO:PO:0020030PO:PO:0020038PO:PO:0020090PO:PO:0020100
PO:PO:0020137PO:PO:0025022PFscan:PS50005PFscan:PS50293PANTHER:PTHR26312PANTHER:PTHR26312:SF76
UniProt:Q9SF54SMART:SM00028SUPFAM:SSF48452InterPro:TPR-contain_domInterPro:TPR-like_helical_dom_sfInterPro:TPR_repeat
UniParc:UPI00000A2BF1SEG:seg::::
Description
At3g09490 [Source:UniProtKB/TrEMBL;Acc:Q9SF54]
Coordinates
chr3:+:2915550..2916870
Molecular Weight (calculated)
38412.5 Da
IEP (calculated)
9.986
GRAVY (calculated)
-0.281
Length
334 amino acids
Sequence
(BLAST)
001: MASPATFQFS RTKLNLQINL VERKSPSKLS FPLLFRDQAK STPIRFPVIR ASSSSSASNH KPSLLKTTFI SLTAAAALFS ASFYFVNKRA AMTPVAVVET
101: TLEKHLETQS NDVNALSLLT EIKFKSDKHE QAIVFLDRLI EIEPYERKWP AMKARILSYH GKSESAIEAF EEILEKDPIR VDAYHYLVME YYNSKPKLTE
201: IEKRINKVIR RCKKEKKTKE ILGFRMLIAQ IRFIEGKSVE AIRICEELVK EDPNDFTIYL FQGVVYTLMN KGEEAAKQFE HVARVIPRNH PSRETAARTT
301: NSNEWRVIVA YDNVYCYLST FARLSMASLF NKFG
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.