Factsheet for PGSC0003DMT400028724

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	plastid
ChloroP:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400061430	Potato	plastid	59.3	58.29
Bra017190.1-P	Field mustard	cytosol	31.4	54.55
PGSC0003DMT400091279	Potato	plastid	45.06	50.0
VIT_08s0040g02670.t01	Wine grape	plastid	50.87	48.48
KRH57052	Soybean	cytosol	30.23	47.49
CDY46775	Canola	plastid	44.19	46.06
Bra023116.1-P	Field mustard	plastid	44.19	45.51
AT2G37400.1	Thale cress	plastid	43.9	45.35
CDX93382	Canola	plastid	42.44	44.65
CDY18448	Canola	plastid	42.15	44.48
KRG95856	Soybean	plastid	43.9	43.02
GSMUA_Achr7P15300_001	Banana	mitochondrion, plastid	43.02	42.77
CDY11220	Canola	plastid	38.37	42.17
Bra005759.1-P	Field mustard	plastid	38.37	42.17
KRH67571	Soybean	plastid	40.12	42.07
CDX80831	Canola	cytosol, plastid	38.08	41.85
AT5G02590.1	Thale cress	cytosol	38.95	41.1
AT3G53560.2	Thale cress	plastid	44.48	39.43
KRH19745	Soybean	plastid	37.21	38.91
Bra007011.1-P	Field mustard	plastid	36.34	38.7
CDX78187	Canola	plastid	35.47	38.12
CDX73544	Canola	plastid	25.0	33.99
PGSC0003DMT400080145	Potato	cytosol	13.08	33.58
AT3G09490.1	Thale cress	plastid	30.52	31.44
PGSC0003DMT400080166	Potato	plastid	26.16	26.09
PGSC0003DMT400086906	Potato	plastid	22.67	24.38

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:102598663	EntrezGene:102599314	MapMan:35.1	ncoils:Coil	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:IPR011990	InterPro:IPR013026	InterPro:IPR019734	UniProt:M1ARL1
PFAM:PF13432	EnsemblPlantsGene:PGSC0003DMG400011057	PGSC:PGSC0003DMG400011057	EnsemblPlants:PGSC0003DMT400028724	PFscan:PS50005	PFscan:PS50293
PANTHER:PTHR26312	PANTHER:PTHR26312:SF76	SMART:SM00028	SUPFAM:SSF48452	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf
InterPro:TPR_repeat	UniParc:UPI00029549BC	RefSeq:XP_006339040.1	RefSeq:XP_006339041.1	RefSeq:XP_006339042.1	SEG:seg

Description

Chloroplast lumen common family protein [Source:PGSC_GENE;Acc:PGSC0003DMG400011057]

Coordinates

chr10:+:54527617..54529041

Molecular Weight (calculated)

39509.6 Da

IEP (calculated)

6.802

GRAVY (calculated)

-0.384

Length

344 amino acids

Sequence
(BLAST)

001: MNTINPFSAK TIQIDKKINH SLHHHRPILS KPFSSLCFRT PLFPSFLPIK ASSSLSFQNP ETPKSINPQN PFSVLLSVLK PTIIATITAT SLFLTRFYFN
101: PKPAFAVSLS SPHTTEANVK DSASDEENEK ALESFLLSNP NDVDALRNLM EIQIKNRKLV DAISTIDKLI ELEPNETEWP LLKSHLYVYN GELELAKIGF
201: SEILKKDPFR VEAYHGLVMV ASQEDSVEEL KEIKKKVEEG IKMCDKESKK GEMRDFMLLL AQIWVIESKY EDALKVYQEL VKEEPKDFRP YLCQGIIHTL
301: LRKKDEAEKS FEEYRRLVPQ GHPYARYFDD NLIATKLFSQ KVES

Best Arabidopsis Sequence Match ( AT2G37400.1 )
(BLAST)

001: MESLGKLQLH QQPNHLSFTH FSSSFPKKPS SFSLRSLPRS TSSFKCISIK ASSSKSQDSK LSILKSTCVS FTAAAALFLV NLQLKPSPAI AAPVAATPLM
101: ESLKQSNGNV SFEEEERSLE EYLASHPDDV EALRSLMEVR IKSRKLLEAI ELIDRLIELE PEEKEWPMLK ANIFSYSGDL ESAKTGFEEI LVKDPLRVEA
201: YHGLVMAYSD SGDDLNAVEK RIEEAMVRCK KEKNRKDLRD FKLLVAQIRV IEGKHNEALK LYEELVKEEP RDFRPYLCQG IIYTVLKKEN EAEKQFEKFR
301: RLVPKNHPYR EYFMDNMVAS KLFAEKVQRE MAE

Arabidopsis Description

At2g37400 [Source:UniProtKB/TrEMBL;Acc:Q9ZUS6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.