Factsheet for PGSC0003DMT400061430

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
extracellular 1
nucleus 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g005740.1.1	Tomato	plastid	85.71	84.75
Bra017190.1-P	Field mustard	cytosol	34.86	61.62
PGSC0003DMT400028724	Potato	plastid	58.29	59.3
CDY46775	Canola	plastid	50.29	53.33
Bra023116.1-P	Field mustard	plastid	49.71	52.1
KRH57052	Soybean	cytosol	30.86	49.32
VIT_08s0040g02670.t01	Wine grape	plastid	50.29	48.75
AT2G37400.1	Thale cress	plastid	46.29	48.65
PGSC0003DMT400091279	Potato	plastid	42.29	47.74
CDY18448	Canola	plastid	44.29	47.55
CDX93382	Canola	plastid	44.0	47.09
GSMUA_Achr7P15300_001	Banana	mitochondrion, plastid	46.0	46.53
Bra005759.1-P	Field mustard	plastid	38.86	43.45
CDY11220	Canola	plastid	38.57	43.13
CDX80831	Canola	cytosol, plastid	38.0	42.49
KRH67571	Soybean	plastid	39.71	42.38
AT5G02590.1	Thale cress	cytosol	39.14	42.02
KRG95856	Soybean	plastid	41.71	41.6
AT3G53560.2	Thale cress	plastid	44.29	39.95
Bra007011.1-P	Field mustard	plastid	36.86	39.94
KRH19745	Soybean	plastid	37.43	39.82
CDX78187	Canola	plastid	35.71	39.06
PGSC0003DMT400080145	Potato	cytosol	13.43	35.07
CDX73544	Canola	plastid	23.14	32.02
AT3G09490.1	Thale cress	plastid	29.71	31.14
PGSC0003DMT400080166	Potato	plastid	26.0	26.38
PGSC0003DMT400086906	Potato	plastid	20.86	22.81

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:102590982	MapMan:35.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR011990	InterPro:IPR013026	InterPro:IPR019734	UniProt:M1C7H0	EnsemblPlantsGene:PGSC0003DMG400023906	PGSC:PGSC0003DMG400023906
EnsemblPlants:PGSC0003DMT400061430	PFscan:PS50005	PFscan:PS50293	PANTHER:PTHR26312	PANTHER:PTHR26312:SF76	SMART:SM00028
SUPFAM:SSF48452	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	InterPro:TPR_repeat	UniParc:UPI000295F1C0	RefSeq:XP_015163475.1
SEG:seg	:	:	:	:	:

Description

Chloroplast lumen common family protein [Source:PGSC_GENE;Acc:PGSC0003DMG400023906]

Coordinates

chr9:-:7459946..7461647

Molecular Weight (calculated)

40466.8 Da

IEP (calculated)

8.289

GRAVY (calculated)

-0.498

Length

350 amino acids

Sequence
(BLAST)

001: MTTLIPVGSR TNPFQKQLHH HRPIYAKPIS CLTFRTSPPP FYPSTIKAYS SSQNSKIPKP LIPQTPNEQP HNPFSFVKPT LIATITATTL LFARYFVFPK
101: PALSNQAFTS SAMETDVVRD AISEEERERT IEEHLVTHPD DVEALRILME IRIKNKKMLD AISIIDRLIE LEPNETEWPL LKSHLYVNSG EIELAKVGFN
201: EILKKDPFRV EAYHGLVMAA SQDESIEELA EIEKKVEEGI KLCKKEKKKS DLRDFKLLLA QIRVIEGKYE DALKVYQELI KEEPRDFRPY LCQGIIYTLL
301: RKNNEAEKCF EKYRRLVPQG HPYARYFDEN MIATKVFAQR AENERASSKS

Best Arabidopsis Sequence Match ( AT2G37400.1 )
(BLAST)

001: MESLGKLQLH QQPNHLSFTH FSSSFPKKPS SFSLRSLPRS TSSFKCISIK ASSSKSQDSK LSILKSTCVS FTAAAALFLV NLQLKPSPAI AAPVAATPLM
101: ESLKQSNGNV SFEEEERSLE EYLASHPDDV EALRSLMEVR IKSRKLLEAI ELIDRLIELE PEEKEWPMLK ANIFSYSGDL ESAKTGFEEI LVKDPLRVEA
201: YHGLVMAYSD SGDDLNAVEK RIEEAMVRCK KEKNRKDLRD FKLLVAQIRV IEGKHNEALK LYEELVKEEP RDFRPYLCQG IIYTVLKKEN EAEKQFEKFR
301: RLVPKNHPYR EYFMDNMVAS KLFAEKVQRE MAE

Arabidopsis Description

At2g37400 [Source:UniProtKB/TrEMBL;Acc:Q9ZUS6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.