CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra007011.1-P	Field mustard	plastid	97.19	96.28
CDX73544	Canola	plastid	60.94	77.08
CDY46775	Canola	plastid	50.62	49.09
CDY18448	Canola	plastid	49.06	48.16
CDX93382	Canola	plastid	47.81	46.79
AT3G53560.2	Thale cress	plastid	56.56	46.65
CDY11220	Canola	plastid	39.06	39.94
KRH57052	Soybean	cytosol	27.19	39.73
KRG95856	Soybean	plastid	43.12	39.32
CDX95523	Canola	cytosol	9.69	39.24
CDX80831	Canola	cytosol, plastid	37.81	38.66
PGSC0003DMT400061430	Potato	plastid	39.06	35.71
Solyc09g005740.1.1	Tomato	plastid	39.38	35.59
PGSC0003DMT400028724	Potato	plastid	38.12	35.47
KRH67571	Soybean	plastid	36.25	35.37
GSMUA_Achr7P15300_001	Banana	mitochondrion, plastid	38.12	35.26
VIT_08s0040g02670.t01	Wine grape	plastid	39.38	34.9
Solyc10g085900.1.1	Tomato	plastid	31.25	32.68
PGSC0003DMT400091279	Potato	plastid	31.56	32.58
KRH19745	Soybean	plastid	33.12	32.22
CDY53407	Canola	cytosol, nucleus, plastid	15.31	29.7
CDY54811	Canola	plastid	28.75	28.84
CDX92326	Canola	plastid	28.75	28.84
CDX92236	Canola	plastid	28.44	28.53
CDY53183	Canola	plastid	26.56	24.78
CDX72699	Canola	plastid	25.94	24.2
CDY53406	Canola	plasma membrane	4.69	6.58

Protein Annotations

EnsemblPlants:CDX78187	EnsemblPlantsGene:GSBRNA2T00129500001	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR011990	InterPro:IPR013026	InterPro:IPR019734	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	InterPro:TPR_repeat
PANTHER:PTHR26312	PANTHER:PTHR26312:SF76	PFscan:PS50005	PFscan:PS50293	ProteinID:CDX78187	ProteinID:CDX78187.1
SEG:seg	SUPFAM:SSF48452	UniParc:UPI0004EDE2C6	MapMan:35.1	:	:

Description

BnaA09g33820D

Coordinates

chrLK031814:-:1637435..1638565

Molecular Weight (calculated)

36431.7 Da

IEP (calculated)

8.193

GRAVY (calculated)

-0.525

Length

320 amino acids

Sequence
(BLAST)

001: MYSLGRLQLH HQPSHLPFTH NSSSFPKQPS LSIRPNPSFK YPSLQASSSS KSQNFILIPL QKSAPFRFLK STCITLTTAA ALLSLKPPAI AAPVRPPNTM
101: EEKEKALEEQ LAADVDTLRS LMEVKFRSGE FTDATKLTDR LIKLEPDEPK WPVQKAKCFL YSGDKESAKS VYQEILAKDP LRPEAHHGLC MASSDEGLDW
201: KKVESIIEEA MLSCRKENRD KEYRGFKLLM AQIRVVRGKH GEALKLYQEL AEEEPGDFWP YFCQGAIYTL LNKEDKAEEQ YLKFKKLVPE NYNYIEDFLV
301: SNLFAGELFS AMERRSGSKS

Best Arabidopsis Sequence Match ( AT2G37400.1 )
(BLAST)

001: MESLGKLQLH QQPNHLSFTH FSSSFPKKPS SFSLRSLPRS TSSFKCISIK ASSSKSQDSK LSILKSTCVS FTAAAALFLV NLQLKPSPAI AAPVAATPLM
101: ESLKQSNGNV SFEEEERSLE EYLASHPDDV EALRSLMEVR IKSRKLLEAI ELIDRLIELE PEEKEWPMLK ANIFSYSGDL ESAKTGFEEI LVKDPLRVEA
201: YHGLVMAYSD SGDDLNAVEK RIEEAMVRCK KEKNRKDLRD FKLLVAQIRV IEGKHNEALK LYEELVKEEP RDFRPYLCQG IIYTVLKKEN EAEKQFEKFR
301: RLVPKNHPYR EYFMDNMVAS KLFAEKVQRE MAE

Arabidopsis Description

At2g37400 [Source:UniProtKB/TrEMBL;Acc:Q9ZUS6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.