CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY54811	Canola	plastid	97.18	97.18
CDX92326	Canola	plastid	97.18	97.18
Bra022321.1-P	Field mustard	cytosol	73.67	95.53
CDY53407	Canola	cytosol, nucleus, plastid	49.22	95.15
CDX95523	Canola	cytosol	20.06	81.01
AT3G18420.1	Thale cress	plastid	79.31	80.06
VIT_01s0010g01810.t01	Wine grape	plastid	56.11	57.37
Solyc01g008160.2.1	Tomato	plastid	53.29	53.12
PGSC0003DMT400086906	Potato	plastid	52.98	52.81
CDX93382	Canola	plastid	30.41	29.66
CDY18448	Canola	plastid	30.09	29.45
CDY46775	Canola	plastid	29.78	28.79
CDX78187	Canola	plastid	28.53	28.44
CDY11220	Canola	plastid	27.9	28.43
CDX80831	Canola	cytosol, plastid	26.33	26.84
CDX73544	Canola	plastid	20.69	26.09
CDY53183	Canola	plastid	26.33	24.49
CDX72699	Canola	plastid	26.33	24.49
CDY53406	Canola	plasma membrane	5.33	7.46

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	EnsemblPlants:CDX92236	ProteinID:CDX92236	ProteinID:CDX92236.1	ncoils:Coil
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00153950001	InterPro:IPR011990	InterPro:IPR013026
InterPro:IPR019734	PFAM:PF13174	PFAM:PF14559	PFscan:PS50293	PANTHER:PTHR26312	PANTHER:PTHR26312:SF70
SMART:SM00028	SUPFAM:SSF48452	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	InterPro:TPR_repeat	UniParc:UPI0004EE6E7D
SEG:seg	:	:	:	:	:

Description

BnaA05g21710D

Coordinates

chrLK031871:-:991432..992391

Molecular Weight (calculated)

35902.1 Da

IEP (calculated)

4.851

GRAVY (calculated)

-0.339

Length

319 amino acids

Sequence
(BLAST)

001: MFTSLSVPSS LPSSLSFSLV AVKTPPVAAH IVPRRDLVSL RIRASKNGSP DYLFHEKLKS FAKSAILIGA AVSMTGKLST LPAKAESPVT TTEELKDENV
101: SSEIEPTSPL TELLESTPEA VKTLRSLLQQ KLENGEDEEA LKLLERLVTA QPDETEWKFL MARLLGEMGR TENARQVFEE ILQRNPLSFE ALFENALLMD
201: RSGEGDAVLQ RLEDALAVAE AENMVKEIRD VRLIIAQIQF LQKNVDEALR SYEQLTREDP KDFRPYFCRG MIYSLLDKNV EAKEQFAKYR ELSPKKFEVE
301: GYLRTPLSKM KLFGSGEDN

Best Arabidopsis Sequence Match ( AT3G18420.1 )
(BLAST)

001: MISSLSASSS LVSSFVAVKA TPVTGPLIPR RDLLSIRIRA SSNQNSSGYC FPEKFKSFAK SAILIGAAVS MTGKFSTLPV KAESPVTTIE KTYEEVKEEK
101: LSEITPLSEL LDSTPEAVET LRSLLQQKLE KGEDEEALKL LERLVAAQPE ETEWKFLMAR LLGEMGRPEN ARQMFEEILQ RNPLSFEALF ENALLMDRSG
201: EGNAVLQRLE DALAVAEAEY LVKEARDVRL IIAQIHFLQK NVDEALKSYE QLTKEDPKDF RPYFCRGMIY SLLDKNVEAK EQFAKYRELS PKKFEVEGYL
301: RTPLSKMKLF GGSEEN

Arabidopsis Description

SG1protein SLOW GREEN 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LS48]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.