Factsheet for AT3G18420.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra022321.1-P	Field mustard	cytosol	65.51	84.15
CDX92326	Canola	plastid	80.38	79.62
CDY54811	Canola	plastid	80.38	79.62
CDY53407	Canola	cytosol, nucleus, plastid	41.46	79.39
CDX92236	Canola	plastid	80.06	79.31
KRH07405	Soybean	cytosol	29.75	57.67
VIT_01s0010g01810.t01	Wine grape	plastid	54.43	55.13
KRH42448	Soybean	mitochondrion, plastid	50.32	54.27
KRH58553	Soybean	plastid	48.42	53.12
Solyc01g008160.2.1	Tomato	plastid	53.48	52.81
PGSC0003DMT400086906	Potato	plastid	53.16	52.5
AT2G37400.1	Thale cress	plastid	30.7	29.13
AT5G02590.1	Thale cress	cytosol	26.58	25.77
AT3G53560.2	Thale cress	plastid	28.8	23.45
AT4G39470.1	Thale cress	plastid	24.68	22.87
AT3G09490.1	Thale cress	plastid	22.47	21.26

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	EntrezGene:821371	UniProt:A0A178VJN4	ProteinID:AEE76095.1	ArrayExpress:AT3G18420
EnsemblPlantsGene:AT3G18420	RefSeq:AT3G18420	TAIR:AT3G18420	RefSeq:AT3G18420-TAIR-G	EnsemblPlants:AT3G18420.1	TAIR:AT3G18420.1
EMBL:AY037258	EMBL:AY077665	EMBL:AY086309	Unigene:At.5474	ProteinID:BAB01108.1	ncoils:Coil
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0008150	GO:GO:0009507	GO:GO:0009536	GO:GO:0009658	GO:GO:0009941
GO:GO:0009987	GO:GO:0016043	InterPro:IPR011990	InterPro:IPR013026	InterPro:IPR019734	RefSeq:NP_566609.1
ProteinID:OAP05948.1	PFAM:PF13174	PFAM:PF14559	PO:PO:0000013	PO:PO:0000037	PO:PO:0000230
PO:PO:0000293	PO:PO:0001054	PO:PO:0001078	PO:PO:0001081	PO:PO:0001185	PO:PO:0004507
PO:PO:0007064	PO:PO:0007095	PO:PO:0007098	PO:PO:0007103	PO:PO:0007115	PO:PO:0007123
PO:PO:0007611	PO:PO:0007616	PO:PO:0008019	PO:PO:0009005	PO:PO:0009006	PO:PO:0009009
PO:PO:0009010	PO:PO:0009025	PO:PO:0009029	PO:PO:0009030	PO:PO:0009031	PO:PO:0009032
PO:PO:0009046	PO:PO:0009047	PO:PO:0009052	PO:PO:0020030	PO:PO:0020038	PO:PO:0020100
PO:PO:0020137	PO:PO:0025022	PO:PO:0025281	PFscan:PS50005	PFscan:PS50293	PANTHER:PTHR26312
PANTHER:PTHR26312:SF70	UniProt:Q9LS48	SMART:SM00028	SUPFAM:SSF48452	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf
InterPro:TPR_repeat	UniParc:UPI00000A3343	SEG:seg	:	:	:

Description

SG1protein SLOW GREEN 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LS48]

Coordinates

chr3:-:6324632..6325866

Molecular Weight (calculated)

35632.9 Da

IEP (calculated)

4.932

GRAVY (calculated)

-0.326

Length

316 amino acids

Sequence
(BLAST)

001: MISSLSASSS LVSSFVAVKA TPVTGPLIPR RDLLSIRIRA SSNQNSSGYC FPEKFKSFAK SAILIGAAVS MTGKFSTLPV KAESPVTTIE KTYEEVKEEK
101: LSEITPLSEL LDSTPEAVET LRSLLQQKLE KGEDEEALKL LERLVAAQPE ETEWKFLMAR LLGEMGRPEN ARQMFEEILQ RNPLSFEALF ENALLMDRSG
201: EGNAVLQRLE DALAVAEAEY LVKEARDVRL IIAQIHFLQK NVDEALKSYE QLTKEDPKDF RPYFCRGMIY SLLDKNVEAK EQFAKYRELS PKKFEVEGYL
301: RTPLSKMKLF GGSEEN

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.