CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 9
nucleus 1

Predictors

GFP

MS/MS

Papers

mitochondrion: 28499913

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH58553	Soybean	plastid	80.2	81.6
KRH07405	Soybean	cytosol	43.0	77.3
CDX95523	Canola	cytosol	19.45	72.15
Bra037582.1-P	Field mustard	cytosol	18.09	70.67
VIT_01s0010g01810.t01	Wine grape	plastid	57.0	53.53
AT3G18420.1	Thale cress	plastid	54.27	50.32
PGSC0003DMT400086906	Potato	plastid	54.61	50.0
Solyc01g008160.2.1	Tomato	plastid	54.61	50.0
KRH57052	Soybean	cytosol	22.87	30.59
KRG95856	Soybean	plastid	30.72	25.64
KRH19745	Soybean	plastid	28.67	25.53
KRH67571	Soybean	plastid	27.3	24.39
KRH53808	Soybean	plastid	27.65	22.75
KRH64138	Soybean	plastid	27.3	22.47
CDY53406	Canola	plasma membrane	4.78	6.14

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:100780000	MapMan:35.1	EMBL:ACUP02004804	ncoils:Coil	EnsemblPlantsGene:GLYMA_08G090400
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	UniProt:I1KRM4	InterPro:IPR011990	InterPro:IPR013026
InterPro:IPR019734	EnsemblPlants:KRH42448	ProteinID:KRH42448	ProteinID:KRH42448.1	PFAM:PF13174	PFAM:PF13181
PFscan:PS50293	PANTHER:PTHR26312	PANTHER:PTHR26312:SF70	SUPFAM:SSF48452	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf
InterPro:TPR_repeat	UniParc:UPI000233899D	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr8:-:6807135..6808741

Molecular Weight (calculated)

32721.1 Da

IEP (calculated)

4.768

GRAVY (calculated)

-0.298

Length

293 amino acids

Sequence
(BLAST)

001: MLTSASSSSS IFSFTPKTLT IPPQQPRFTV RAHSKPPILP NLKTLAGAAV FAAVALQFPS TARASPPPPL ETDHRLNVEE SLSPLSDLLE TNAEALAALK
101: SLLQQKLELG EDDEALAILK RLIAAQPDAA DWKFLAARLT AETGDSDSAR GYYEEVLAAN PLSFEALFEN ALLMDRCGEG EAAMRRLEEA LRVAEEDKMA
201: KEARDVKLIM AQIMFLQKNV DEALVIYNQL TKEDPRDFRP YFCRGMIYSL LDRNEEAKEQ FAKYRELSPK KFEVDGYLRT PLSRMKLFST DES

Best Arabidopsis Sequence Match ( AT3G18420.1 )
(BLAST)

001: MISSLSASSS LVSSFVAVKA TPVTGPLIPR RDLLSIRIRA SSNQNSSGYC FPEKFKSFAK SAILIGAAVS MTGKFSTLPV KAESPVTTIE KTYEEVKEEK
101: LSEITPLSEL LDSTPEAVET LRSLLQQKLE KGEDEEALKL LERLVAAQPE ETEWKFLMAR LLGEMGRPEN ARQMFEEILQ RNPLSFEALF ENALLMDRSG
201: EGNAVLQRLE DALAVAEAEY LVKEARDVRL IIAQIHFLQK NVDEALKSYE QLTKEDPKDF RPYFCRGMIY SLLDKNVEAK EQFAKYRELS PKKFEVEGYL
301: RTPLSKMKLF GGSEEN

Arabidopsis Description

SG1protein SLOW GREEN 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LS48]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.