CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH53808	Soybean	plastid	89.61	89.61
VIT_07s0031g01760.t01	Wine grape	cytosol	47.47	67.06
PGSC0003DMT400080145	Potato	cytosol	25.0	66.42
PGSC0003DMT400080166	Potato	plastid	48.31	49.86
Solyc04g051660.2.1	Tomato	plastid	48.03	49.57
CDY53183	Canola	plastid	45.79	47.52
AT4G39470.1	Thale cress	plastid	45.51	47.51
Bra033620.1-P	Field mustard	plastid	45.22	46.94
CDX72699	Canola	plastid	45.22	46.94
GSMUA_Achr6P00760_001	Banana	plastid	41.85	41.74
OQU77561	Sorghum	plastid	37.08	38.26
Zm00001d037616_P001	Maize	plastid	36.8	35.31
KRH57052	Soybean	cytosol	21.35	34.7
TraesCS1D01G121600.1	Wheat	plastid	35.96	33.68
Os05t0182100-01	Rice	plastid	36.8	33.08
TraesCS1A01G120800.1	Wheat	plastid	35.11	32.89
KRH07405	Soybean	cytosol	14.61	31.9
HORVU1Hr1G027550.1	Barley	plastid	35.67	30.68
TraesCS1B01G140100.1	Wheat	plastid	35.39	30.29
KRG95856	Soybean	plastid	28.09	28.49
KRH42448	Soybean	mitochondrion, plastid	22.47	27.3
KRH67571	Soybean	plastid	25.0	27.13
KRH19745	Soybean	plastid	25.0	27.05
KRH58553	Soybean	plastid	21.63	26.74

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:100795327	MapMan:35.1	EMBL:ACUP02002743	EnsemblPlantsGene:GLYMA_04G218500	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:IPR011990	InterPro:IPR013026	InterPro:IPR019734	UniProt:K7KLL1
EnsemblPlants:KRH64138	ProteinID:KRH64138	ProteinID:KRH64138.1	PFAM:PF13432	PFAM:PF14559	PFscan:PS50005
PFscan:PS50293	PANTHER:PTHR26312	PANTHER:PTHR26312:SF67	SMART:SM00028	SUPFAM:SSF48452	InterPro:TPR-contain_dom
InterPro:TPR-like_helical_dom_sf	InterPro:TPR_repeat	UniParc:UPI000233997E	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr4:+:48960485..48965008

Molecular Weight (calculated)

40633.8 Da

IEP (calculated)

8.442

GRAVY (calculated)

-0.417

Length

356 amino acids

Sequence
(BLAST)

001: MTSTSITTFS IYSQSQPKFL NLLQHPLIHT RTKRTSISFQ PPIVRATLFS TFTSSHTPST PSSNFPSGRA LSKFLSEKVA FFLIGSFLLS GCFSKRSAFA
101: EAAPSVGSGA VLEQNMNPTE EKNEEEKSEE EVEEMWESIL EKDPKNVEAL KVVLYGKIRK GKSKEAVKFV EDLIAAEPNE VEWRLLLALC YETMGQLSKA
201: KKLFREILKK RPLLVRALHG LAMAMHKNHE GPAVFEMLNN AQELASRENR VTEERNIRIL IAQMHVVQGN LEEGLKRFQE LIDQNPRDFR PYICQGIIYS
301: LLGKNEEAAQ QFETYQTLVP EEFPQRGFLD DVAIAAKRTS LEQFKKEFRD QFSYRK

Best Arabidopsis Sequence Match ( AT4G39470.1 )
(BLAST)

001: MCSIGVTALC SPAKFHHRRE QSLIFTPTHL RNPNGFQFRW RKSRPFAPRL AQPDNFAPPL PLIRSSTSLL SSKDFVQMLA RKAAILLVGS FVFLGFCSSK
101: PALALPTATV VSQAELEDEK MFEKLLENEP ENMEAMKAVV YKKMRRGKNE DAVKYVEKLM KLEPHEVEWK LLEALCYETM GELSKAKRLY KDILKEQPLL
201: IRALHGLAMV MHKTHDTSVF DMLIEAMEVA RQGNRVTEER NIQVLIGQMH IVEGQFEEGL KIFQQMVNDN PRDFRPYLCQ GIVYSLMDKK EEAAQQFEIY
301: WSLVPGEFPQ KGFLDDVALA AQAKSRERLQ NTFKAKFTQG R

Arabidopsis Description

AT4g39470/F23K16_100 [Source:UniProtKB/TrEMBL;Acc:Q94A56]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.