Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
PGSC0003DMT400080145 | Potato | cytosol | 40.08 | 75.37 |
PGSC0003DMT400080166 | Potato | plastid | 65.87 | 48.12 |
Solyc04g051660.2.1 | Tomato | plastid | 65.87 | 48.12 |
KRH64138 | Soybean | plastid | 67.06 | 47.47 |
KRH53808 | Soybean | plastid | 66.67 | 47.19 |
AT4G39470.1 | Thale cress | plastid | 59.52 | 43.99 |
CDX72699 | Canola | plastid | 59.13 | 43.44 |
CDY53183 | Canola | plastid | 58.73 | 43.15 |
Bra033620.1-P | Field mustard | plastid | 57.94 | 42.57 |
GSMUA_Achr6P00760_001 | Banana | plastid | 56.75 | 40.06 |
OQU77561 | Sorghum | plastid | 49.21 | 35.94 |
TraesCS1D01G121600.1 | Wheat | plastid | 49.6 | 32.89 |
TraesCS1A01G120800.1 | Wheat | plastid | 49.21 | 32.63 |
Zm00001d037616_P001 | Maize | plastid | 48.02 | 32.61 |
Os05t0182100-01 | Rice | plastid | 49.6 | 31.57 |
TraesCS1B01G140100.1 | Wheat | plastid | 50.0 | 30.29 |
HORVU1Hr1G027550.1 | Barley | plastid | 48.81 | 29.71 |
VIT_01s0010g01810.t01 | Wine grape | plastid | 33.33 | 26.92 |
VIT_08s0040g02670.t01 | Wine grape | plastid | 34.92 | 24.38 |
Protein Annotations
Gene3D:1.25.40.10 | EntrezGene:100254208 | wikigene:100254208 | MapMan:35.1 | ProteinID:CBI21527 | ProteinID:CBI21527.3 |
UniProt:D7SW78 | EMBL:FN595233 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | InterPro:IPR011990 |
InterPro:IPR013026 | EntrezGene:LOC100254208 | wikigene:LOC100254208 | PFscan:PS50293 | PANTHER:PTHR26312 | PANTHER:PTHR26312:SF67 |
SUPFAM:SSF48452 | InterPro:TPR-contain_dom | InterPro:TPR-like_helical_dom_sf | UniParc:UPI0001BE1FCD | ArrayExpress:VIT_07s0031g01760 | EnsemblPlantsGene:VIT_07s0031g01760 |
EnsemblPlants:VIT_07s0031g01760.t01 | RefSeq:XP_002275767 | RefSeq:XP_002275767.1 | SEG:seg | : | : |
Description
No Description!
Coordinates
chr7:+:17850176..17854507
Molecular Weight (calculated)
29544.6 Da
IEP (calculated)
7.037
GRAVY (calculated)
-0.627
Length
252 amino acids
Sequence
(BLAST)
(BLAST)
001: MALPAHMGRY SSNVEQKRDA QDSESEHDDM YAKILEKDPR NVEALKVVLY GKMRRGKTKE AVEYVERLID IEPDEVEWRL LQALSYEIMG HLSKAKRLFK
101: EILKERPLLL RALHGLALVM HKNHEGPDAV FEMLNNALEV ARHQKRVTEE RSIRILIAQM HVVQGDLEEG LKKFQDLVDE NPRDFRPYLC QGIIYSLLDK
201: KKEAQEQFEI YRTLVPEEFP QRGFLNDVVS AAKAKSRERF HKEFQAEFSN IR
101: EILKERPLLL RALHGLALVM HKNHEGPDAV FEMLNNALEV ARHQKRVTEE RSIRILIAQM HVVQGDLEEG LKKFQDLVDE NPRDFRPYLC QGIIYSLLDK
201: KKEAQEQFEI YRTLVPEEFP QRGFLNDVVS AAKAKSRERF HKEFQAEFSN IR
001: MCSIGVTALC SPAKFHHRRE QSLIFTPTHL RNPNGFQFRW RKSRPFAPRL AQPDNFAPPL PLIRSSTSLL SSKDFVQMLA RKAAILLVGS FVFLGFCSSK
101: PALALPTATV VSQAELEDEK MFEKLLENEP ENMEAMKAVV YKKMRRGKNE DAVKYVEKLM KLEPHEVEWK LLEALCYETM GELSKAKRLY KDILKEQPLL
201: IRALHGLAMV MHKTHDTSVF DMLIEAMEVA RQGNRVTEER NIQVLIGQMH IVEGQFEEGL KIFQQMVNDN PRDFRPYLCQ GIVYSLMDKK EEAAQQFEIY
301: WSLVPGEFPQ KGFLDDVALA AQAKSRERLQ NTFKAKFTQG R
101: PALALPTATV VSQAELEDEK MFEKLLENEP ENMEAMKAVV YKKMRRGKNE DAVKYVEKLM KLEPHEVEWK LLEALCYETM GELSKAKRLY KDILKEQPLL
201: IRALHGLAMV MHKTHDTSVF DMLIEAMEVA RQGNRVTEER NIQVLIGQMH IVEGQFEEGL KIFQQMVNDN PRDFRPYLCQ GIVYSLMDKK EEAAQQFEIY
301: WSLVPGEFPQ KGFLDDVALA AQAKSRERLQ NTFKAKFTQG R
Arabidopsis Description
AT4g39470/F23K16_100 [Source:UniProtKB/TrEMBL;Acc:Q94A56]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.