Factsheet for Os05t0182100-01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G121600.1	Wheat	plastid	66.16	68.95
TraesCS1A01G120800.1	Wheat	plastid	65.4	68.16
OQU77561	Sorghum	plastid	58.33	66.96
Zm00001d037616_P001	Maize	plastid	61.62	65.77
HORVU1Hr1G027550.1	Barley	plastid	67.93	64.98
TraesCS1B01G140100.1	Wheat	plastid	66.41	63.22
PGSC0003DMT400080145	Potato	cytosol	19.95	58.96
VIT_07s0031g01760.t01	Wine grape	cytosol	31.57	49.6
PGSC0003DMT400080166	Potato	plastid	37.12	42.61
GSMUA_Achr6P00760_001	Banana	plastid	36.87	40.9
Solyc04g051660.2.1	Tomato	plastid	35.35	40.58
KRH53808	Soybean	plastid	33.84	37.64
AT4G39470.1	Thale cress	plastid	32.32	37.54
CDY53183	Canola	plastid	32.32	37.32
CDX72699	Canola	plastid	32.07	37.03
KRH64138	Soybean	plastid	33.08	36.8
Bra033620.1-P	Field mustard	plastid	31.82	36.73

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	EntrezGene:4337992	ProteinID:AAW57819.1	EMBL:AK071095	EMBL:AK106020
ProteinID:BAF16732.1	ProteinID:BAS92571.1	ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR011990	InterPro:IPR013026	EnsemblPlantsGene:Os05g0182100	EnsemblPlants:Os05t0182100-01	PFscan:PS50293	PANTHER:PTHR26312
PANTHER:PTHR26312:SF67	UniProt:Q5KQJ2	SUPFAM:SSF48452	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	UniParc:UPI00004C3D2F
RefSeq:XP_015637570.1	SEG:seg	:	:	:	:

Description

Tetratricopeptide-like helical domain containing protein. (Os05t0182100-01)

Coordinates

chr5:-:4938322..4940925

Molecular Weight (calculated)

44722.0 Da

IEP (calculated)

4.565

GRAVY (calculated)

-0.576

Length

396 amino acids

Sequence
(BLAST)

001: MTSAMAMSFL STTAASSSQP PLPARRLPRR NPSLPFPLRP PHRLSPFSAP PPEPHRLTYR THSTSSSSRT PTAAGLLSPV ISTSRTLIFL LVASLLSLSG
101: VRPLPSLASP PPPTQQPQET EEQEQQQESE EKQQQQQEEE GVEAEVEEAW LRQDEEEEVE EKEEEEEEAD DEVQMYMEIL SRDPGDVDAL KCALFAKMRR
201: AEWGGALGFA RRLREAEPGE VEWRLMEALL HELKGDLAEA ERLFNEVLAE KPLLVRALHG LALCMHKRSE GPTVFEMLEK ALQLAISGER VPEERNIKLL
301: IAQMHVVKGQ LDVASEKLQN LINEDPRDFR PHLCQGIVYA LLDKKEEADE LFDTYRSLVP DEFPDKSFIS DVIQAARVES KDRLQKDFGS EFLSKK

Best Arabidopsis Sequence Match ( AT4G39470.1 )
(BLAST)

001: MCSIGVTALC SPAKFHHRRE QSLIFTPTHL RNPNGFQFRW RKSRPFAPRL AQPDNFAPPL PLIRSSTSLL SSKDFVQMLA RKAAILLVGS FVFLGFCSSK
101: PALALPTATV VSQAELEDEK MFEKLLENEP ENMEAMKAVV YKKMRRGKNE DAVKYVEKLM KLEPHEVEWK LLEALCYETM GELSKAKRLY KDILKEQPLL
201: IRALHGLAMV MHKTHDTSVF DMLIEAMEVA RQGNRVTEER NIQVLIGQMH IVEGQFEEGL KIFQQMVNDN PRDFRPYLCQ GIVYSLMDKK EEAAQQFEIY
301: WSLVPGEFPQ KGFLDDVALA AQAKSRERLQ NTFKAKFTQG R

Arabidopsis Description

AT4g39470/F23K16_100 [Source:UniProtKB/TrEMBL;Acc:Q94A56]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.